Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0085
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    28   7.9  
BT011188-1|AAR88549.1| 1034|Drosophila melanogaster RE06749p pro...    28   7.9  
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    28   7.9  
AF002164-1|AAC14585.1| 1034|Drosophila melanogaster AP-3 delta-a...    28   7.9  
AE014298-1950|AAF48307.2| 1034|Drosophila melanogaster CG10986-P...    28   7.9  

>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 348 QIIDAKKGXNVLKRVQLPPLNLDMLPIGNIVNIFSKL 458
           ++ DA+K  N+L R +L P ++  + + N++ +F++L
Sbjct: 428 ELEDAEKTLNILLRPRLLPGHIQGVYVQNVIKLFARL 464


>BT011188-1|AAR88549.1| 1034|Drosophila melanogaster RE06749p
           protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 348 QIIDAKKGXNVLKRVQLPPLNLDMLPIGNIVNIFSKL 458
           ++ DA+K  N+L R +L P ++  + + N++ +F++L
Sbjct: 494 ELEDAEKTLNILLRPRLLPGHIQGVYVQNVIKLFARL 530


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 348 QIIDAKKGXNVLKRVQLPPLNLDMLPIGNIVNIFSKL 458
           ++ DA+K  N+L R +L P ++  + + N++ +F++L
Sbjct: 428 ELEDAEKTLNILLRPRLLPGHIQGVYVQNVIKLFARL 464


>AF002164-1|AAC14585.1| 1034|Drosophila melanogaster AP-3
           delta-adaptin subunit protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 348 QIIDAKKGXNVLKRVQLPPLNLDMLPIGNIVNIFSKL 458
           ++ DA+K  N+L R +L P ++  + + N++ +F++L
Sbjct: 494 ELEDAEKTLNILLRPRLLPGHIQGVYVQNVIKLFARL 530


>AE014298-1950|AAF48307.2| 1034|Drosophila melanogaster CG10986-PB
           protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 348 QIIDAKKGXNVLKRVQLPPLNLDMLPIGNIVNIFSKL 458
           ++ DA+K  N+L R +L P ++  + + N++ +F++L
Sbjct: 494 ELEDAEKTLNILLRPRLLPGHIQGVYVQNVIKLFARL 530


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,396
Number of Sequences: 53049
Number of extensions: 297641
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)