Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0081
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   3.2  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   3.2  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.7  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U13646-4|AAC24420.1|  211|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative pota...    27   7.5  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 574 LLISLPIRCSSAVKYXRRRLTLGSPPT 494
           LLIS    CSS V Y +++  LG+PP+
Sbjct: 272 LLISFSTICSSVVIYVQKQGNLGNPPS 298


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 574 LLISLPIRCSSAVKYXRRRLTLGSPPT 494
           LLIS    CSS V Y +++  LG+PP+
Sbjct: 272 LLISFSTICSSVVIYVQKQGNLGNPPS 298


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 574 LLISLPIRCSSAVKYXRRRLTLGSPPT 494
           LLIS    CSS V Y +++  LG+PP+
Sbjct: 217 LLISFSTICSSVVIYVQKQGNLGNPPS 243


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 574 LLISLPIRCSSAVKYXRRRLTLGSPPT 494
           LLIS    CSS V Y +++  LG+PP+
Sbjct: 314 LLISFSTICSSVVIYVQKQGNLGNPPS 340


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVD--VENQKYRKTHWN 294
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     ++  + + K R+    
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGCIAHDKQRRVPLG 160

Query: 295 ATN 303
            T+
Sbjct: 161 QTD 163


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 371 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 267
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical
           protein C40C9.1 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
           L+ R  RR I  + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344


>U13646-4|AAC24420.1|  211|Caenorhabditis elegans Hypothetical
           protein ZK783.3 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 353 LRRRSKWRENSANQRAAWRTVPR*TMEGPTKRAKSXCCRNERHPADTG 496
           LRRRSK  + S +Q+   +TV     EGP+K ++       R  + TG
Sbjct: 17  LRRRSKSTDASNDQKKGTKTVD--GAEGPSKASRVKTAFRNRKKSTTG 62


>AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative
           potassium channel subunitn2P20 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
           L+ R  RR I  + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 380 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTS 255
           SLS+ FD  T+    +   D++  D F   +  F   WFST+
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTA 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,778
Number of Sequences: 27780
Number of extensions: 333885
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)