Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0080
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 121  TGLFLTIYYTANIEIAFYRVNYICRNVNY 207
            TG    +YY    E+ FY  N+   ++NY
Sbjct: 1600 TGHVAPLYYHPEDEVVFYNANF---SINY 1625


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 434 CNPLFRNYIRKLNLRGIC 487
           CNP++  Y +K    G+C
Sbjct: 566 CNPIYDAYCQKHYANGLC 583


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/21 (23%), Positives = 14/21 (66%)
 Frame = +3

Query: 90  TSFMSNNSNYYWIIFNNILHS 152
           TSF+ N+  + W++ ++ + +
Sbjct: 487 TSFLVNDFGFIWLVLSSTVRA 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,801
Number of Sequences: 336
Number of extensions: 2322
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)