Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0080
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    69   6e-13
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.2  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   4.2  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.7  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 68.5 bits (160), Expect = 6e-13
 Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
 Frame = +3

Query: 249 FFICIYLHIGRGIYYESFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVIT 422
           FFI +YLHIGRG+YY S+                         Y LP  Q+SFWGATVIT
Sbjct: 89  FFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVIT 148

Query: 423 NLLSAIPYXXXXXXXXXXXXFAVDNATLTDF--THFIFXY 536
           NLLSA+P+            F+V N TL  F   H++  +
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPF 188



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +1

Query: 94  ALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFLFAFIYI 273
           A  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGASFF F F+Y+
Sbjct: 37  ACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95



 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 338 FIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYIRKLNLRGICCR*CYINRFY 517
           F+ T    F   CL      F G       +   P   + +  L   G       +NRF+
Sbjct: 121 FLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFF 180

Query: 518 TFHFXLPFII 547
           + H+ +PF+I
Sbjct: 181 SLHYLMPFVI 190


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 323 NWXYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYIRKLNLR 478
           N  Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 118 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASFFLFAFIYISDE 282
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S +
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVSSQ 55


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 350 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 451
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 508 VNVALSTANPPQIQFPNIVPK*GIADNR 425
           +N A+  AN P  + PN  P   + DNR
Sbjct: 149 LNGAIDVANLPFEELPNFCPDMSVLDNR 176


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 180 KLYLPKCKLWLNNSNITC*WSFIFFICIYLHIGRGIYYESFNLK 311
           + Y  KCKLW ++ N +   S+    C    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKS---SYHCDDCGICRIGRGLGDDYFHCK 246


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 323 NWXYNFIYTNSNCFHRLCLTLRSNIFLGGN 412
           NW       +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,431
Number of Sequences: 5004
Number of extensions: 35735
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)