Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0080
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         47   9e-06
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   30   1.1  
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               30   1.1  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 21/46 (45%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +1

Query: 139 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGAS-FFLFAFIYI 273
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FF+  + +I
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHI 46



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +3

Query: 246 IFFICIYLHIGRGIYYESFN 305
           +FFIC+Y HIGRG+YY S++
Sbjct: 37  MFFICLYAHIGRGLYYGSYS 56


>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 441

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 428 IICNPLFRNYIRKLNLRGICCR*CYINRFYTFH 526
           I+  P  R YIR L L   CCR C  ++ YT H
Sbjct: 193 IMWPPFRRTYIRVLQLPMACCRSCRGSQNYTSH 225


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 372 YVLP*GQISFWGATVITNLLSAIPYXXXXXXXXXXXXFAVDNATLTDF 515
           Y LP  QI +W   ++T +  AIP              +V  +TLT F
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,134
Number of Sequences: 59808
Number of extensions: 227643
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)