Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0079
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 107 6e-25
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 72 4e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 71 8e-14
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 4e-08
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 0.58
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 2.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 3.1
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.1
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 4.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 7.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 7.1
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 9.4
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 107 bits (258), Expect = 6e-25
Identities = 45/61 (73%), Positives = 55/61 (90%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VY+NEA+GGKYVPRAV+VDL PGTMD+V+SG FG +FRPDN ++GQSGAGN AKGHYT
Sbjct: 48 NVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 78.2 bits (184), Expect = 5e-16
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERL 47
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 72.1 bits (169), Expect = 4e-14
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 260 YYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+++E GKYVPR++ VDL P +D VR+GP+ +F P+ + G+ A NN A+GHYT
Sbjct: 52 FFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 215
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 70.9 bits (166), Expect = 8e-14
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 260 YYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+++E GK+VPR++ VDL P +D VR+GP+ +F P+ V G+ A NN A+GHYT
Sbjct: 56 FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYT 113
Score = 38.7 bits (86), Expect = 4e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 239
MRE++ + GQ G QIG WE+ EHGI G + +S++
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.0 bits (119), Expect = 4e-08
Identities = 19/59 (32%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +2
Query: 257 VYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNLAKGH 427
V++ ++ +Y+PRA+++DL P ++++ S +G ++ P+N + ++ GAGNN A G+
Sbjct: 50 VFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
Score = 50.4 bits (115), Expect = 1e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 117 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 215
REI+ +QAGQCGNQIG++FW+ + EHGI G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 0.58
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 405 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 310
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 182 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 78
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 79 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 237
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 3.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 347 GPFGQIFRPDNFVFGQSG 400
GP+G +F P F+F +G
Sbjct: 157 GPYGTMFLPQQFIFDSNG 174
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 79 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 237
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 4.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -2
Query: 139 AWMWTISLMIALKIWNPPNRI 77
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 109 QS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLNASCLL*RSFRGXV 288
+S S +S ++ +S SS S++S++ + ++A+P+ S ++S SF
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITST 230
Query: 289 RPAS 300
PAS
Sbjct: 231 TPAS 234
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 278 LKLRYSRHDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 105
++L SR + G+ + V + +Y P S+ + + RLDVD F H T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 93 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 236
F + S I I C + +W+V+ G+ TGA S SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 154 FPH*PAWMWTISLMIALKIWNPPNR 80
FP MWTI L++ L +W+ ++
Sbjct: 25 FPLVSFLMWTIGLIVLLGLWSTQDK 49
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -1
Query: 422 LSPSYSPPQTVRRRSCPVGRFAQTARNGRSPWFQXQGPPS 303
LSPS++PP V+ F ++ + W + P+
Sbjct: 222 LSPSFAPPSNVKSPVQQHRSFVSSSARAKKNWGRQSNSPN 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,372
Number of Sequences: 5004
Number of extensions: 34658
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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