Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0079
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.50 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.50 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 383 RSCPVGRFAQTARNGRSPWFQXQGPPSQLAGRTXPLK 273
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 383 RSCPVGRFAQTARNGRSPWFQXQGPPSQLAGRTXPLK 273
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 358 PKRPGTDGVHGSRXKVHH 305
           P+ PGT  ++ ++ K HH
Sbjct: 139 PREPGTPRINFTKLKRHH 156


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 190 TSTALTPRVLTAATPTCSLNAS 255
           T+T  T    T  TP  + NAS
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNAS 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,247
Number of Sequences: 438
Number of extensions: 2762
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)