Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0077
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 30 0.99
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 29 1.7
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 28 3.0
11_04_0421 - 17477935-17478234,17478470-17478679 28 3.0
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 27 5.3
12_01_0178 + 1316730-1316949,1317781-1318655 27 7.0
11_01_0178 + 1410226-1410804,1411414-1411449 27 7.0
11_01_0177 + 1406725-1406920,1407444-1408267 27 7.0
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 27 7.0
10_08_0524 + 18537858-18538189,18539022-18539847 27 9.2
01_05_0783 + 25183361-25185628 27 9.2
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800... 27 9.2
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVCLVPRD 215
FCK SCC C SL LVC D
Sbjct: 68 FCKRCSCCICHQFDDNKDPSLWLVCASEND 97
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
+CK SCC C + SL LVC
Sbjct: 155 YCKRCSCCICHKYDENKDPSLWLVC 179
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
FCK SCC C SL LVC
Sbjct: 347 FCKRCSCCICHLFDDNKDPSLWLVC 371
>11_04_0421 - 17477935-17478234,17478470-17478679
Length = 169
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = +2
Query: 242 APACTAGPTT-----QNDFQLLDX-EYIRENFKLPQRAXYLDPXRRP 364
AP C PT Q ++D Y F P+RA ++DP R P
Sbjct: 6 APQCYKAPTRSRLPEQKKLSIIDSFRYFLVRFPSPKRAQHMDPAREP 52
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 85 LFCLCFYHFFVCFNLFKFCTKN 20
LF LCF+ F + FN TKN
Sbjct: 97 LFVLCFFLFQIAFNCLLITTKN 118
>12_01_0178 + 1316730-1316949,1317781-1318655
Length = 364
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 260 GPTTQNDFQLLDXEYIRENFKLPQR 334
G T +DFQL+D I F LP R
Sbjct: 190 GETQDDDFQLIDGAIICSEFVLPDR 214
>11_01_0178 + 1410226-1410804,1411414-1411449
Length = 204
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 260 GPTTQNDFQLLDXEYIRENFKLPQR 334
G T +DFQL+D I F LP R
Sbjct: 25 GETQDDDFQLIDGAIICSEFVLPDR 49
>11_01_0177 + 1406725-1406920,1407444-1408267
Length = 339
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 260 GPTTQNDFQLLDXEYIRENFKLPQR 334
G T +DFQL+D I F LP R
Sbjct: 182 GETRDDDFQLIDGAIICSEFVLPNR 206
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 185 SAAGLPGSSRWSIFGSQXKAPACTAGPTTQNDFQLLD 295
+ AGL SS ++FG K AC + P + D +LD
Sbjct: 1327 AGAGLYDSSLKNLFGITTKLTACFSVPMDEEDEVILD 1363
>10_08_0524 + 18537858-18538189,18539022-18539847
Length = 385
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 165 HSGAXSSLPLVCLVPRDGASSEARXKPRPAQL 260
H A S P L+P+DGA R PR + L
Sbjct: 82 HPTAALSKPASALLPKDGAGEVRRVDPRASVL 113
>01_05_0783 + 25183361-25185628
Length = 755
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 105 FFGDSFQFCKMTSCCTCEGHHSGAXSSLPLV 197
++G + + C + SC T +G + GA S P+V
Sbjct: 724 WWGTAGEHCPLASCPTAKGINLGADSVCPVV 754
>01_03_0134 +
12879254-12879596,12879689-12879796,12879905-12880000,
12880090-12880182,12880861-12880949,12881313-12881588,
12881656-12881808
Length = 385
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 274 LSCGPSCAGRGFXLASEDAPSRGTRQTSG 188
L+ GP C+ G+ ASE P R +R +G
Sbjct: 112 LNGGPGCSSVGYGAASELGPLRVSRNGAG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,670
Number of Sequences: 37544
Number of extensions: 199490
Number of successful extensions: 471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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