Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0077
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   1.8  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   3.1  
SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)          27   7.2  

>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 138  TSCCTCEGHHSGAXSSLPLVC 200
            T  C C G+++GA  S+PL C
Sbjct: 4307 TFLCVCVGNYTGALCSIPLAC 4327


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 118 ESPKNTLKVFKLFCLCFYHFFVCFNLFKFC 29
           ++ K    V  +F LC++ FFV F  F++C
Sbjct: 286 KATKTLAVVVGVFILCWFPFFVIFVTFQYC 315


>SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)
          Length = 886

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 197 LPGSSRWSIFGSQXKAPACTAGPTTQNDFQLLDXEYIRENFKLPQ 331
           LP    W   G++ +    T+   TQND Q    E+I   FKL Q
Sbjct: 8   LPSMESWEGSGAKFQDGGKTSNNKTQNDLQKKCIEHIFVVFKLYQ 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,355
Number of Sequences: 59808
Number of extensions: 229508
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)