Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0077
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine re...    27   6.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   8.3  

>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 423 YFLAKLKCLQSSRVIGKVXR-GRLXGSKYXALCGNLKFSLMY--SXSSNWKSF 274
           +F++ + C+   ++   V   G +  S    + G+ K++L+Y  S SSNWKSF
Sbjct: 429 FFVSIVLCIILFKIAMTVFAMGLVVSSVCVPVFGDDKYTLLYWNSDSSNWKSF 481


>AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein28 protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 109 KNTLKVFKL-FCLCFYHFFVCFNLF 38
           +N + +F + FC+  Y FF CF L+
Sbjct: 124 RNFIWIFSIIFCITLYEFFKCFLLY 148


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 123  QFCKMTSCCTCEGHHSGAXSSLPLVCLVPRDGASSEARXK 242
            ++C   S C C G ++G  +    VCL PR    +  + K
Sbjct: 1313 RYC-FPSGCQCSGAYTGTQACANSVCLFPRTSCCAPYKKK 1351


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 112  PKNTLKVFKLFCLCFYHFFVCF 47
            P N   VF  FC  +YH+F  F
Sbjct: 1069 PTNAHVVFFFFCHLYYHYFFLF 1090


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,556
Number of Sequences: 27780
Number of extensions: 176322
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)