Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0070
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       28   6.5  
04_01_0271 + 3612066-3614056,3614666-3614780                           28   6.5  
01_01_0522 - 3834551-3835451,3835992-3836572                           28   6.5  
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395           27   8.5  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 RVCTKLV*SFSLAGKYKLAILLSRPVRNIICV 398
           R C + V  + +AG+++ A++    V N ICV
Sbjct: 196 RCCNRCVHPYCIAGEHRAALIQPIDVENFICV 227


>04_01_0271 + 3612066-3614056,3614666-3614780
          Length = 701

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 54  WHALXHSVRCFGMWYRL 104
           W +L H+V C G W+RL
Sbjct: 341 WSSLRHAVLCAGRWHRL 357


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 118 PCIQPPLVCPKNTEHRXRHAGKXACCPACVTXLGEG-ATCKIYSKELAKPPPLCVRSLSN 294
           P IQP L C     H+  HA + A   A     G+G    +    E A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 295 ASKEF 309
            SK F
Sbjct: 331 RSKSF 335


>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
          Length = 704

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 222 RCNLQDLFEGTGETPSAVCXEPLKC 296
           RC  Q+ FEG G T  A C    KC
Sbjct: 236 RCECQEGFEGDGYTAGAGCRRVPKC 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,694
Number of Sequences: 37544
Number of extensions: 292078
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)