Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0068
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6ERK7 Cluster: Hyalin repeat protein; n=1; unidentifie...    36   0.47 
UniRef50_Q5DFV6 Cluster: SJCHGC09529 protein; n=2; Schistosoma j...    33   4.4  
UniRef50_Q55FJ5 Cluster: RNA polymerase III subunit; n=1; Dictyo...    33   4.4  

>UniRef50_A6ERK7 Cluster: Hyalin repeat protein; n=1; unidentified
           eubacterium SCB49|Rep: Hyalin repeat protein -
           unidentified eubacterium SCB49
          Length = 1008

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = -3

Query: 138 NFVKKYAFIFVVCFISTQSSHQRNEFSVMNN 46
           N + +Y F+F++CF+ST ++ + N F+ +N+
Sbjct: 2   NKITQYVFVFIMCFLSTLNAQEENSFTSLNS 32


>UniRef50_Q5DFV6 Cluster: SJCHGC09529 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC09529 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 507

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 243 IRLLDKYSFLCEMYDEDADEIKDLTLIIFHLTFGSNNR 356
           I+L DKYSFL + Y+ D +  + ++L +F+    +NN+
Sbjct: 265 IKLFDKYSFLSKQYNADLEVYQIISLQLFNNNNNNNNQ 302


>UniRef50_Q55FJ5 Cluster: RNA polymerase III subunit; n=1;
           Dictyostelium discoideum AX4|Rep: RNA polymerase III
           subunit - Dictyostelium discoideum AX4
          Length = 666

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 276 EMYDEDADEIKDLTLIIFHLTFGSNNRREXRQKCFETSTTTTLK 407
           ++YDED DE  DL +I  ++    N+     +    T+TTTT K
Sbjct: 297 DIYDEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTK 340


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,478,277
Number of Sequences: 1657284
Number of extensions: 6651857
Number of successful extensions: 13012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13005
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)