Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0066
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 318 SILVRGASLGNGDSVTSNAHRILIWVWR 235
           SI  R +++ +GD +T N   + + VWR
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWR 196


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 1   KPYRQ*KSSGTSSIPKFHSSLQDLKQP 81
           +P +  +SS  SSIPK + S   + QP
Sbjct: 354 EPPKSSESSTGSSIPKLNLSTALMSQP 380


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  T*NNQAFKSQDALPPVS 118
           T + Q  KSQ +LPPVS
Sbjct: 286 TLSTQHAKSQASLPPVS 302


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 264 AHRILIWVWRLTDHLTTA 211
           +HR   W W  T H  +A
Sbjct: 24  SHRPAWWFWTATSHEASA 41


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 368 KSSGGCSLSWF 400
           +SSGG  L WF
Sbjct: 59  ESSGGVELGWF 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,624
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)