Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0066
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    34   0.045
At5g63540.1 68418.m07975 expressed protein  ; expression support...    31   0.42 
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    31   0.42 
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    31   0.56 
At1g31370.1 68414.m03839 expressed protein ; expression supporte...    29   1.3  
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /...    29   2.2  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   3.0  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   3.9  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    28   3.9  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   3.9  
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain...    27   6.9  
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    27   6.9  
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    27   9.1  
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual...    27   9.1  

>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 303 GASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEY 172
           G  +G  ++V S+ H+  +  W + D L T   G++ SSRG  Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308


>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 31/108 (28%), Positives = 46/108 (42%)
 Frame = -2

Query: 492 ISVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSI 313
           +   ++R     + TAS + +R  +DI    + +  +      T     GA   ARS + 
Sbjct: 318 VGATVSRVEHMQIDTASAHGERTFSDIHS-TSSNIHRAASTAGTGTSCSGACSGARSFAN 376

Query: 312 LVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYS 169
            V G SL    +VTS    + I   R+ D  TT   GSDS     E+S
Sbjct: 377 NVGGNSLDQTSNVTSFVEEMHIDTGRVRD-TTTHIYGSDSGGVAAEFS 423


>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -2

Query: 360 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRG 181
           A  R+G      S S  + G +L       S A  + +WV   +D++  ++  SD    G
Sbjct: 62  AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121

Query: 180 TEYSTTCRTARRAYSKARMACDTGG 106
                  RT+      A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
 Frame = -2

Query: 462 NTVRTASYNIKRPVADI-SQHPNHDSEQPP--ELLKTAVPRRGAKLNARSTSILVRGASL 292
           +T+R  S N    V    SQ PN D E      LLK  V    AKL A +TSI+   A L
Sbjct: 242 STMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAEL 297

Query: 291 GNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDT 112
               S    A   ++   +    L  +SNG    S     S+     RR+  + ++  + 
Sbjct: 298 QRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEV 357

Query: 111 GGKAS 97
            G +S
Sbjct: 358 LGISS 362


>At1g31370.1 68414.m03839 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 464 KTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCH 351
           K+ FE+   I S   P  P++RTT+ NSL S     CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163


>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Lycopersicon
           esculentum] GI:4325090; contains PF00295: Glycosyl
           hydrolases family 28
          Length = 471

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 297 SLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARM 124
           S G G  +    HR LI+   LTD + T  NG+    +GT +    R     Y++  +
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT-IDGQGTVWWDWFRNGELNYTRPHL 181


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 243 VWRLTDHLTTASNGSDSSSRGTEYSTT 163
           +W + DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 37  SIPKFHSSLQDLKQPSLQEPRCLATRV 117
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 307 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVGDW 426
           D YGR   V++  + + R   E WR+    F+ ++R+ G  G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 322 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 417
           RAR+ L  A    G + +W   A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776


>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 488

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 296 DAPLTSMDVERALSFAPRRGTAVFKSSGGC---SLSWFGCWEMSATGRLIL 439
           D+P++  D  +    A R  TA  K+  GC   +L+W G  ++    RL++
Sbjct: 2   DSPVSKTDASKEKFVASRPSTADSKTMRGCGLANLAWVGVDKVELRQRLMM 52


>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 447 ASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILV 307
           ++Y+I+     I  +      Q    LK   PRRG KLNA++  I +
Sbjct: 330 STYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 19  KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 135
           K S  S I  FH   Q+ ++P ++ PR L  + +  A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483


>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
           specificity kinase 1 (ADK1) [Arabidopsis thaliana]
           gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
           and gi:1216483.  Note: differences between cDNAs in the
           11th exon, possibly due to errors or alternative
           splicing.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 487 RIFNTENEKHRSNSELQY*AASRRHFPTSEPRQRTASR 374
           RI   E  ++R +  ++  A SRRH  TS  R R+ASR
Sbjct: 329 RIAGKETRENRFSGAVE--AFSRRHPATSTTRDRSASR 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,160
Number of Sequences: 28952
Number of extensions: 181421
Number of successful extensions: 631
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)