Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0064
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   2.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   6.2  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 96  AFLHPWLXAADVARSSTVSSFNCTRADAA 182
           AF  PWL    +   +    F+CT  + A
Sbjct: 16  AFSRPWLLQGHIRTHTGEKPFSCTYCNRA 44


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = +3

Query: 78  GAVSAPAFLHPWLXAADVARSSTVSSFNCTRADAANVRR 194
           G  S P  ++PW+    + +S+  ++    R     +RR
Sbjct: 192 GQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTRAIRR 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,547
Number of Sequences: 336
Number of extensions: 1657
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)