Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0064
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 136 2e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 9e-17
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.51
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 1.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 4.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 136 bits (329), Expect = 2e-33
Identities = 63/106 (59%), Positives = 78/106 (73%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFXPLTSRGAQQYRALTVPELTLQ 183
M+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GF PL + G+ ++A++VPELT Q
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ 292
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKXTSNXRIFXXKTA 321
MFDA NMMVA DPRHGRYLTVA + G+ K+ R K +
Sbjct: 293 MFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Score = 83.8 bits (198), Expect = 1e-17
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +3
Query: 255 FRGRMSMKEVXEQLANIQXXNSTYFVXXIPNNCKIAVCXIPPRGLXXASTFIGNTXGIQT 434
FRG++SMKEV EQ+ ++Q NS YFV IP+N AVC +PP+ L ++TFIGN+ IQ
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQE 376
Query: 435 IFXKVSEQFVXXSRXK 482
IF ++ +QF R K
Sbjct: 377 IFRRLGDQFSAMFRRK 392
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.0 bits (191), Expect = 9e-17
Identities = 36/90 (40%), Positives = 52/90 (57%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFXPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF + P+ S + + +V E+T Q
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL 273
F+ N MV CDPR GRY+ + G+ +
Sbjct: 299 CFEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 29.5 bits (63), Expect = 0.29
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 246 CDDFRGRMSMKEVXEQLANIQXXNSTYFVXXIPNNCKIAVCXIPPR 383
C +RG + ++V + +I+ + FV P KI +C PP+
Sbjct: 320 CLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQ 365
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 80.6 bits (190), Expect = 1e-16
Identities = 36/90 (40%), Positives = 52/90 (57%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFXPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF + P+ S + + +V E+T Q
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL 273
F+ N MV CDPR GRY+ + G+ +
Sbjct: 295 CFEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 246 CDDFRGRMSMKEVXEQLANIQXXNSTYFVXXIPNNCKIAVCXIPPR 383
C +RG + ++V + I+ + FV P KI +C PP+
Sbjct: 316 CLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQ 361
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 57.6 bits (133), Expect = 1e-09
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFXPLTSRGAQQYRAL---TVPEL 174
MS TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDV 295
Query: 175 TLQMFDAKNMMVACDP-RHGRYLTVATISGGE 267
++ KN MV+ +P + ++++ I GE
Sbjct: 296 MRRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.51
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 301 FASCSXTSFIDIRPLKSSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 158
F+ C T I P+ N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 106 TPGFXPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATISGGECL 273
TP ++ Y A+++ +L + M + +GRYL SGG C+
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVCI 501
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 428 YARRVTNEGRSXXKTPRRYXTHGN 357
+ RR NE R+ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,837
Number of Sequences: 5004
Number of extensions: 26806
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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