Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0063
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   1.5  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   3.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   6.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.0  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 478 VYLTRKTKNTVRTASYNIKRPSRRHFPTSEPRQRTASRXLEDRGATTRSEAQR 320
           VY TR+  N  +   YN+  P     PT  P +RT +    D   TTR   +R
Sbjct: 150 VYYTRQ--NQFKPTLYNLYNPQPSPMPTLLPYERTVNGLFID--DTTRERIER 198


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 335 ERSSTRALRPYSSEERRSGTETA*LQTPSQFSFGYGG 225
           ++ S  A      +E  S   ++  QTPS+FS  YGG
Sbjct: 37  DKPSAGAAPAVGDDESVSSRGSSRSQTPSEFSSNYGG 73


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 446 SNSELQY*AAQSPTFPNIRTTTANSLQXS*RPRCHDAERSSTRALRPYSSEE 291
           SN  L   ++Q     N +T   NS + +       AE SST  + PY S +
Sbjct: 148 SNYPLDAISSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 376  TASRXLEDRGATTRSEAQRAL 314
            +AS  LEDR A  ++EAQR +
Sbjct: 1221 SASSNLEDRAARIKAEAQRRM 1241


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 427 IKRPSRRHFPTSEPRQRTASRXLEDRG 347
           I R S RH P S P        LED+G
Sbjct: 667 IARRSNRHHPYSRPSSTRPQCQLEDQG 693


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 460 TKNTVRTASYNIKRPSRRHFPTSEPRQRTASR 365
           TKN     S+++K P R  FP   P   TAS+
Sbjct: 351 TKNVENPVSHHLKSPVRTSFP---PASTTASK 379


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 13  SSGTSSIPKFHSSLQDLKQPSLQEPR 90
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,340
Number of Sequences: 5004
Number of extensions: 30235
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)