Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0063
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 32 0.18
At2g32140.1 68415.m03928 disease resistance protein (TIR class),... 30 0.72
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ... 29 1.3
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 29 1.3
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 28 2.9
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 2.9
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 3.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 6.7
At3g10710.1 68416.m01289 pectinesterase family protein contains ... 27 6.7
At2g25660.1 68415.m03075 expressed protein 27 6.7
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof... 27 8.9
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica... 27 8.9
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica... 27 8.9
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = -1
Query: 351 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRG 172
A R+G S S + G +L S A AV +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 171 TEYSTTCRTARRAYSKARMACDTGG 97
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 371
Score = 30.3 bits (65), Expect = 0.72
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = -1
Query: 402 SQHPNHDSEQPPX--LLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVW 229
SQ PN D E LLK V AKL A +TSI+ A L S A ++
Sbjct: 260 SQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAELQRAHSDAIQAAETVVVDV 315
Query: 228 RLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
+ L +SNG S S+ RR+ + ++ + G +S
Sbjct: 316 KTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEVLGISS 362
>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
putative nearly identical to 67kD chloroplastic
RNA-binding protein, P67 [Arabidopsis thaliana]
GI:9755842
Length = 688
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 298 DEYGRRARVELRSASWHRGLQEXWRL----FAVVVRMLGNVGDWAA*YCNSLFERCFSFS 465
D YGR V++ + + R E WR+ F+ ++R+ G G++ C +++E +
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDG--CLNIYEEMKALG 296
Query: 466 V 468
V
Sbjct: 297 V 297
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 294 GASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
G +G ++V S+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 333 AKLNARSTSILVRGAS-LGNGDSVTSNAIAVLIWVWRLTD 217
A + A S+ G + L N +TSNA+A++ W+ ++ D
Sbjct: 177 ALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIAD 216
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 28 SIPKFHSSLQDLKQPSLQEPRCLATRV 108
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 313 RARVELRSASWHRGLQEXWRLFAVVVRMLGNV 408
RAR+ L A G + W A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776
>At3g10710.1 68416.m01289 pectinesterase family protein contains
similarity to pectinesterase GB:AAB57671 [Citrus
sinensis]; contains Pfam profile: PF01095 pectinesterase
Length = 561
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
L N +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 284 SDAPLTSMDVERALSFAPRRGTAVFKXSGGCSLSWFGCWEMSATGPLNIVTRCSNGVFRF 463
+DAP + DV +LSF RG +F + WFG + A+G I G F
Sbjct: 727 NDAPSSFSDVSASLSF---RGQRIFLHNAN---GWFGKVPLEASGDFGI--HPDEGEFHL 778
Query: 464 PC 469
C
Sbjct: 779 MC 780
>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 493
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 10 KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 126
K S S I FH Q+ ++P ++ PR L + + A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483
>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 380
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 367 WRLFAVVVRMLGNVGDWAA*YCNSLFERCFSFSVLN 474
WRLF + + G V CN++ E C + SV N
Sbjct: 303 WRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTN 338
>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 440
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 367 WRLFAVVVRMLGNVGDWAA*YCNSLFERCFSFSVLN 474
WRLF + + G V CN++ E C + SV N
Sbjct: 363 WRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTN 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,854
Number of Sequences: 28952
Number of extensions: 170907
Number of successful extensions: 545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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