Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0056
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 96 2e-21
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 27 1.6
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 2.7
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 3.6
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.6
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 4.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 6.3
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 96.3 bits (229), Expect = 2e-21
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +2
Query: 89 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
AVIK DMSE+MQQ+A+ A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGR
Sbjct: 2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGR 56
Score = 58.0 bits (134), Expect = 7e-10
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
G FGS+VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 55 GRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 438 PQPEPRMRIXKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 313
PQ EP + Y N A N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 201 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 52
L N SF + N + A+ C+SSL+ L L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 50 KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 178
+QKQ + + RK K M+E+ + + + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 161 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 48
++L L + QH+ L SC ++L +L H CL F++ S
Sbjct: 39 KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 399 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 277
P+DN A+ IE +L+G+T KE+ H+ ++ ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 53 QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 169
+K+T + KM K ++K AD+S +Q+D + T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 163 LERLSCTVNSILLHLFAHVSILYDCF 86
LE L+ +N + +FA++ + DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 6.3
Identities = 31/109 (28%), Positives = 48/109 (44%)
Frame = -2
Query: 393 DNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKIRPTMQCQVGLYFL 214
D A+A +K +E +L+ L + +V ++E+ L IR I Q L+
Sbjct: 2 DRKANAYSKSVE-LLSRLEGCPSE-----KVLLEELRKLRGFIRNDIPSNFFPQ--LFIT 53
Query: 213 SNSFLMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILS 67
N F + + LNF S ++ CC+ L A T LRS +LS
Sbjct: 54 DNGFAA-IKKAVTKLNFQSL-LSLDIFECCLQILGIATSYTILRSWLLS 100
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 164 KFNIEKDIAAFIKKEFDKKYNPTWHCIVGRILARM*HT 277
KF D+AA I + F TW ++ +++AR+ HT
Sbjct: 1711 KFGEHSDVAAAIVEGFSNVPMDTWLEVIPQLIARI-HT 1747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,880
Number of Sequences: 5004
Number of extensions: 38011
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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