Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0056
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               120   5e-28
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   1e-06
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  120 bits (290), Expect = 5e-28
 Identities = 53/60 (88%), Positives = 58/60 (96%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60



 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
           G  FGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 59  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +2

Query: 92  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTWHCIVG 250
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+  +WH +VG
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVG 79


>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 232 LALHRGSYFGSYVTHETRHFIYFYLGQVAILLFKSG*T 345
           L  HR    GSY      H I+ Y G++  +L+++  T
Sbjct: 837 LTAHRSPVLGSYYGDPLPHIIHLYWGRITEILYRTSFT 874



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 232  LALHRGSYFGSYVTHETRHFIYFYLGQVAILLFKSG*T 345
            L  HR    GSY  +   H ++ Y G++ ++ +++  T
Sbjct: 931  LTAHRSPVLGSYYGNPLPHTVHLYWGRITMIPYRTSFT 968


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 444 NVPQPEPRMRIXKGYPSDNTASAANKKIEVMLNGLT 337
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,158
Number of Sequences: 59808
Number of extensions: 300311
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)