Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0056
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.77 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 38   VHLSKQKQTQDKMC-DRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFD 214
            +H ++ K+T DK+C   + V+  A     ++  +       +EK     + A  +KK  +
Sbjct: 1689 IHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEK----NEAAMKLKKRIE 1744

Query: 215  KKYNP 229
            K  NP
Sbjct: 1745 KGANP 1749


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 222 TILPGIASWVVFWLVCDTRDSPLHLLL 302
           +IL  + SWV FWL  D   SP  ++L
Sbjct: 242 SILIVVISWVSFWLHMDA--SPPRIVL 266


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 226 SYLALHRGSYFGSYVTHETRHFIYFYLGQVAIL 324
           S L +    YF ++VTH       F  G V I+
Sbjct: 156 SLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIV 188


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 160 ERLSCTVNSILLHLFAH 110
           ER+ C+ NS++ H++ +
Sbjct: 42  ERVYCSRNSLMTHIYTY 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 224 NPTWHCIVGRILARM 268
           NP WH I+G ++  +
Sbjct: 48  NPMWHGILGFVIGML 62


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 IASWVVFWL 263
           I SWV FWL
Sbjct: 257 IVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 IASWVVFWL 263
           I SWV FWL
Sbjct: 257 IVSWVSFWL 265


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 224 NPTWHCIVGRILARM 268
           NP WH I+G ++  +
Sbjct: 14  NPMWHGILGFVIGML 28


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 244 DAMPGRIVFLVKFFL 200
           DA+PGR+  LV   L
Sbjct: 226 DAIPGRVALLVTSML 240


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 222 TILPGIASWVVFWL 263
           T L  I SWV FW+
Sbjct: 255 TCLIVIMSWVSFWI 268


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 225 ILPGIASWVVFWL 263
           +L  + SWV FWL
Sbjct: 225 VLLVVLSWVSFWL 237


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 IASWVVFWL 263
           I SWV FWL
Sbjct: 236 IISWVSFWL 244


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 IASWVVFWL 263
           I SWV FWL
Sbjct: 236 IISWVSFWL 244


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 IASWVVFWL 263
           I SWV FWL
Sbjct: 175 IISWVSFWL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,382
Number of Sequences: 438
Number of extensions: 2659
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)