Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0055
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 31 0.49
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.5
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 2.0
10_08_0520 - 18495118-18498237 29 2.6
09_04_0500 - 18120287-18122233 29 2.6
01_01_1127 + 8930593-8932681,8932812-8933401 29 2.6
04_03_0633 + 18208116-18208732,18209916-18210129 28 3.5
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.6
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 4.6
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265... 27 6.0
08_02_1080 - 24197514-24199415 27 8.0
02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600 27 8.0
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 395 IRTTTANSLQXS*RPRCHDAERSSTRALRPYSSEERR 285
++T T + S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 76 GLVVLGPEDWSEISVLNWSQKIS 8
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 313 RARVELRSASWHRGLQXLWRLFAVVVRMLGNVGD 414
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 268 AVSVPERRSSDEYGRRARVELRSASWHR 351
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 313 RARVELRSASWHRGLQXLWRLFAVVVRMLGNVGD 414
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>04_03_0633 + 18208116-18208732,18209916-18210129
Length = 276
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = -3
Query: 288 SLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMAC 109
SLG NA+A+L+W+ R G D+ R T A R S+AR
Sbjct: 25 SLGVPPPPARNAVALLMWLGR-----RGGGAGVDAVDRARRLVRTRHDAARLASEARAVL 79
Query: 108 DTGGKASWLLKAW 70
G A L + W
Sbjct: 80 HGGAAALDLARRW 92
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFXVTLSPFPSDAPLTSMDVERAL 325
SVS + R A A S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>07_01_0361 -
2655442-2655706,2656339-2656466,2658428-2658438,
2659586-2659704,2659746-2659906,2660115-2660132
Length = 233
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 328 LRSASWHRGLQXLWRLFAV-VVRMLGNVGDWPLNIVTR 438
LRS W + + LW F+V +V L +V W L + +R
Sbjct: 58 LRSFEWLKQIVALWSQFSVNLVITLEDVAPWLLTVASR 95
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 268 AVSVPERRSSDEYGRRARVELRSASWHR 351
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600
Length = 292
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 344 GTAVFKXSGGCSLSWFGCWEMSATGRLIL*LAVRTVFFVFR 466
G+ + CS+ F C+E++A G +I L T FF+ R
Sbjct: 172 GSTLLALGSSCSVPLFWCYEITAWGLVI--LYAGTAFFLRR 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,428
Number of Sequences: 37544
Number of extensions: 216447
Number of successful extensions: 705
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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