Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0055
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               32   0.22 
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   6.2  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           27   8.2  

>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 463 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRXLEDRGATTRSEAQRAL 314
           E EK+  + EL+    S  HF   E ++R   R +ED+    +SE ++ L
Sbjct: 332 EEEKYGKDGELRMLKESLAHFQAEEAKKREQIRAMEDQRKQEQSEKEKEL 381


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 422 SGQSPTFPNIRTTTANSLQXS*RPRCHDAERSSTRALRPYSSEERRS 282
           S +SP+ P  RTT   S + S       + R++ R    +SS +RR+
Sbjct: 155 SSKSPSPPTNRTTQGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRT 201


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 384 DSEQPPEXLKTAVPRRGAKLNARSTSILVRGASLGNG 274
           DS+ PPE L    P+     N  +  +   G++ GNG
Sbjct: 231 DSDSPPEQLNNLGPQNNQNTNRENEVLNGNGSNGGNG 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,034
Number of Sequences: 59808
Number of extensions: 234130
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)