Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0054
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 32 0.18
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 29 1.2
At2g32140.1 68415.m03928 disease resistance protein (TIR class),... 29 1.2
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 29 1.6
At1g31370.1 68414.m03839 expressed protein ; expression supporte... 29 1.6
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 28 2.9
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 2.9
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 3.8
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ... 28 3.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 3.8
At3g10710.1 68416.m01289 pectinesterase family protein contains ... 27 6.6
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain... 27 6.6
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof... 27 8.8
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = -2
Query: 351 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRG 172
A R+G S S + G +L S A AV +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 171 TEYSTTCRTARRAYSKARMACDTGG 97
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 294 GASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
G +G ++V S+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 371
Score = 29.5 bits (63), Expect = 1.2
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Frame = -2
Query: 453 NTVRTASYNIKRPVADI-SQHPNHDSEQPP*--LLKTAVPRRGAKLNARSTSILVRGASL 283
+T+R S N V SQ PN D E LLK V AKL A +TSI+ A L
Sbjct: 242 STMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAEL 297
Query: 282 GNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDT 103
S A ++ + L +SNG S S+ RR+ + ++ +
Sbjct: 298 QRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEV 357
Query: 102 GGKAS 88
G +S
Sbjct: 358 LGISS 362
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEVTLSP-FPSDAPLTSMDVERALSFAPRRGTAVFKSYGGCSLSWFG 394
S+S H+ AM+ +SP S AP S + +P R K YGG SL F
Sbjct: 253 SISSHSDS-PAMSPSAAMSPPMNSTAPHWSTNQNTHSPSSPERTVRNNKRYGGQSLRMFS 311
Query: 395 CWEMS 409
W +
Sbjct: 312 LWNQN 316
>At1g31370.1 68414.m03839 expressed protein ; expression supported
by MPSS
Length = 193
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 455 KTPFEQRVTILSGQSPTFPNIRTTTANSLHSS*RPRCH 342
K+ FE+ I S P P++RTT+ NSL S CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 333 AKLNARSTSILVRGAS-LGNGDSVTSNAIAVLIWVWRLTD 217
A + A S+ G + L N +TSNA+A++ W+ ++ D
Sbjct: 177 ALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIAD 216
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 28 SIPKFHSSLQDLKQPSLQEPRCLATRV 108
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
putative nearly identical to 67kD chloroplastic
RNA-binding protein, P67 [Arabidopsis thaliana]
GI:9755842
Length = 688
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 298 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVGDW 417
D YGR V++ + + R E WR+ F+ ++R+ G G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 408
RAR+ L A G + +W A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776
>At3g10710.1 68416.m01289 pectinesterase family protein contains
similarity to pectinesterase GB:AAB57671 [Citrus
sinensis]; contains Pfam profile: PF01095 pectinesterase
Length = 561
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
L N +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220
>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 488
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 287 DAPLTSMDVERALSFAPRRGTAVFKSYGGC---SLSWFGCWEMSATGRLIL 430
D+P++ D + A R TA K+ GC +L+W G ++ RL++
Sbjct: 2 DSPVSKTDASKEKFVASRPSTADSKTMRGCGLANLAWVGVDKVELRQRLMM 52
>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 493
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 10 KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 126
K S S I FH Q+ ++P ++ PR L + + A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,933,920
Number of Sequences: 28952
Number of extensions: 172528
Number of successful extensions: 564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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