Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0053
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 134 5e-32
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 116 1e-26
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 99 2e-21
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 63 1e-10
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 63 1e-10
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 57 1e-08
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 56 2e-08
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 56 2e-08
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 53 2e-07
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 47 1e-05
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 46 1e-05
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 45 4e-05
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 44 7e-05
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 41 5e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 40 9e-04
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 40 0.002
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 40 0.002
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.077
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 33 0.10
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 33 0.18
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 31 0.41
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 30 0.95
AF036692-7|AAB88324.2| 203|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 29 1.7
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 29 1.7
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z82265-3|CAB05173.1| 471|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormo... 27 6.7
U28741-2|AAA68326.2| 377|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF068713-3|AAC17793.1| 286|Caenorhabditis elegans Serpentine re... 27 8.9
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 134 bits (323), Expect = 5e-32
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y RL +PVP++ A P+ +NILEW Y++ G K+PYEGG Y K++FP++FPFKPP+I M
Sbjct: 17 YQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPPAILM 76
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
+TPNGRF+TNTRLCLSI+D+HPDT
Sbjct: 77 LTPNGRFQTNTRLCLSISDYHPDT 100
Score = 88.2 bits (209), Expect = 3e-18
Identities = 35/72 (48%), Positives = 56/72 (77%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYV 433
WNPAW++STI+TGL+SFM + PTLGS+ TSE +++ LA +S + N+K+K FC LFPE
Sbjct: 101 WNPAWTVSTIITGLMSFMNDNQPTLGSLVTSESERKLLAKKSKQWNLKDKSFCALFPEEA 160
Query: 434 EEIEQQLKQRQE 469
++I +++++ +
Sbjct: 161 DQIREEMEKMNQ 172
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 116 bits (279), Expect = 1e-26
Identities = 48/84 (57%), Positives = 62/84 (73%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y +L DPV + A P NILEWHY ++G +P+ GGYY K+IF FP+ PP+I M
Sbjct: 28 YAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWSPPAITM 87
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
ITPNGRF+TNTRLCLSI+D+HP++
Sbjct: 88 ITPNGRFQTNTRLCLSISDYHPES 111
Score = 53.6 bits (123), Expect = 9e-08
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINIK 397
WNP W++S IL GL SFM E +P GSI + +R AA S E N+K
Sbjct: 112 WNPGWTVSAILIGLHSFMNENSPAAGSIAGTPQDQRMYAAASKEFNVK 159
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 99.1 bits (236), Expect = 2e-21
Identities = 35/77 (45%), Positives = 56/77 (72%)
Frame = +3
Query: 24 PVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRF 203
P A+P+ N+ EWH+ ++G + +EGG YH +IIFP ++P KPP++ ++TPNGRF
Sbjct: 25 PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMKPPNLILLTPNGRF 84
Query: 204 KTNTRLCLSITDFHPDT 254
+ N ++CLSI+ +HP+T
Sbjct: 85 ELNKKVCLSISGYHPET 101
Score = 35.9 bits (79), Expect = 0.019
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTP--TLGSIETSEYQKRCLAAESLEINIKNKMFCELFPE 427
W P+WSI T L L+ F L TP LGS++ +++ LA S E K + C +
Sbjct: 102 WLPSWSIRTALLALIGF-LPSTPGGALGSLDYPPKERQRLAKLSCEWKCK-ECGCVMKTA 159
Query: 428 YVEEIEQ-QLKQRQEA 472
+ E QLKQ +EA
Sbjct: 160 LLPITEDGQLKQTEEA 175
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L DP +A PV ++ W + GP +SPY+GG + I FP ++PFKPP + T
Sbjct: 13 LGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72
Query: 192 --NGRFKTNTRLCLSITDFHPDTGTLLGLFLRSLQVC*VLC 308
+ +N +CL I + L L +C +LC
Sbjct: 73 IYHPNINSNGSICLDILRSQWSPALTISKVL--LSICSLLC 111
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L DP +A PV ++ W + GP +SPY+GG + I FP ++PFKPP + T
Sbjct: 13 LGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72
Query: 192 --NGRFKTNTRLCLSITDFHPDTGTLLGLFLRSLQVC*VLC 308
+ +N +CL I + L L +C +LC
Sbjct: 73 IYHPNINSNGSICLDILRSQWSPALTISKVL--LSICSLLC 111
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL DPVP ++A P SN +H ++ GP+ SP+ GG + ++ P E+P P + +T
Sbjct: 15 RLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMT 74
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 75 KIYHPNIDKLGRICLDI 91
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ +L+ DP V+ P NIL W ++ GP+++P+E G + + F E+P KPP++
Sbjct: 13 FKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKF 72
Query: 183 IT 188
I+
Sbjct: 73 IS 74
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ +L+ DP V+ P NIL W ++ GP+++P+E G + + F E+P KPP++
Sbjct: 13 FKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKF 72
Query: 183 IT 188
I+
Sbjct: 73 IS 74
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L++ PV T + N+ W + GP K+ Y+GGY+ I FP +P+ PPS+ T
Sbjct: 22 LQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTK 81
Query: 192 --NGRFKTNTRLCLSI 233
+ N LC+SI
Sbjct: 82 VWHPNVYENGDLCISI 97
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 173 DLHDNTEWQVQDKHTIV--PQYYRLSSGHWNPAWSISTILTGLLSFMLE-KTPTLGSIET 343
++++N + + H+ + PQ L+ WNP S+ TIL ++S + E T + +++
Sbjct: 86 NVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLLNEPNTSSPANVDA 145
Query: 344 S 346
S
Sbjct: 146 S 146
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPS-NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIY 179
Y L P + A P+ N EW ++ GPE++ + G + +I FP+++P PP +
Sbjct: 13 YKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLSPPKMR 72
Query: 180 MITPNGRFKTNT----RLCLSI 233
G F N R+C+SI
Sbjct: 73 FTC--GIFHPNIYADGRVCISI 92
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSN-ILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
++ PV +A V N I +W +V GP + YEGG++ + FPR++P KPP + I+
Sbjct: 15 MRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS 74
Query: 189 P--NGRFKTNTRLCLSI 233
+ +C+SI
Sbjct: 75 EIWHPNIDKEGNVCISI 91
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 44.8 bits (101), Expect = 4e-05
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
+N+++ +KGPE +PY GG + K+ P +PF+PP +
Sbjct: 48 NNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKV 87
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 12 LKNDPVP-YVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
LKN V Y E +N+L+W V+ P+K PY G + I FP ++PFKPP +
Sbjct: 14 LKNCGVKAYENVECEETNLLKWT-VLLIPDKEPYNKGAFKVGITFPVDYPFKPPKV 68
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP---NGRFKTNT----RLCLSI 233
++ GP+ +PY G + I FP +PF PP +T N RF N ++CLSI
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSI 505
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 36 VTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT----PNGRF 203
+ E + N+ E ++GP +PY GG + I P ++PF PP++ T PN
Sbjct: 27 IMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSS 86
Query: 204 KTNTRLCLSI 233
+T +CL I
Sbjct: 87 QTGV-ICLDI 95
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 40.3 bits (90), Expect = 9e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
++KG E++PYEGG + I +PFK P++ IT
Sbjct: 384 IIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFIT 419
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +3
Query: 15 KNDPVPYVTAEPVPS-----NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIY 179
K+ P ++ A+PV + N+ W + G + + +EGG Y +++F +FP PP
Sbjct: 18 KDHPFGFI-AKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCK 76
Query: 180 MITP--NGRFKTNTRLCLSITDFHPD 251
P + + +CLS+ D + D
Sbjct: 77 FEPPLFHPNVYPSGTVCLSLLDENKD 102
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +3
Query: 15 KNDPVPYVTAEPVPS-----NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIY 179
K+ P ++ A+PV + N+ W + G + + +EGG Y +++F +FP PP
Sbjct: 18 KDHPFGFI-AKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCK 76
Query: 180 MITP--NGRFKTNTRLCLSITDFHPD 251
P + + +CLS+ D + D
Sbjct: 77 FEPPLFHPNVYPSGTVCLSLLDENKD 102
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 33.9 bits (74), Expect = 0.077
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 90 GPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
GP+ + YE G + ++ P ++PFK PSI
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSI 69
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
W V GP SP+EGG Y + F ++P PP TP
Sbjct: 71 WICTVPGPRGSPWEGGEYEVSVNF-HKWPIIPPICEFKTP 109
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKI 137
L DP + V ++ W + GP +SPY+GG + I
Sbjct: 13 LGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 63 ILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
+ W + GP ++PYE Y+ +I +P +PP++ T
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTT 79
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM----ITPNGRFKTNTRLC 224
+++ +W V G E + Y G + + F ++PF P + I + +N +C
Sbjct: 33 NDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQYPFNSPEVMFVGETIPAHPHIYSNGHIC 92
Query: 225 LSI 233
LSI
Sbjct: 93 LSI 95
>AF036692-7|AAB88324.2| 203|Caenorhabditis elegans Hypothetical
protein C44B12.1 protein.
Length = 203
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 498 CTTVLIQQHASCRCFNCCSISSTYSGNNSQNI-LFFMFISRDSAAK 364
C I SC+ NCCSISS +G++S+ + + +F + SA K
Sbjct: 134 CRNTAIYSQESCQ--NCCSISSRAAGSSSKVVGILMIFDPKLSADK 177
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 93 PEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
P++ Y GG + KI P E+ PP + +T + + +CLSI
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSI 115
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 84 VKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
+ GP +PYE G + + FP +P P I
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQI 65
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 476 NMPLVVVLIAVQSPLHIQGTIHKTFYFLCLSLEILQ 369
NMP +V++ AV++P + GT+ K + L E ++
Sbjct: 22 NMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIK 57
>Z82265-3|CAB05173.1| 471|Caenorhabditis elegans Hypothetical
protein F02H6.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 104 SLRRGILSXKDYFPKGISVQTTFDLHDNTEWQVQDKHTIVPQYY--RLSSGHWN 259
S R IL+ ++ P+G T FD T W K +P Y L G+WN
Sbjct: 405 STNRVILA--EFGPRGAMETTPFDQSKPTYWAYLMKRYFMPALYWNGLIKGYWN 456
>AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 261 protein.
Length = 330
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 308 LEKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEIEQQLKQRQEAC 475
+++ T ETS + S +N++N E+ YV+E+E+ L Q++ C
Sbjct: 91 VDRNETFQKSETSSNINYAMHGFSKVLNLQND---EILQFYVKEVEKSLSQKKRNC 143
>U28741-2|AAA68326.2| 377|Caenorhabditis elegans Hypothetical
protein F35D2.2 protein.
Length = 377
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 6 LRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREF 155
+R++N VP + P +++ + Y+ K PE+ YY K I+ + F
Sbjct: 301 MRMRNMVVPGMAYMPYMNSVSLYPYISKMPEQWLQPDPYYSTKDIYQQIF 350
>AF068713-3|AAC17793.1| 286|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 66 protein.
Length = 286
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 236 CNTEAQSCVCLEPAIRCYHVNRRWFERKFPWENNLSMIISPF----VGTFLRPFNDV 78
CN+ + + +I CY + ++ ++ W++ S+I + F V TF P N +
Sbjct: 8 CNSLSILFPIITCSINCYLIYSIFYSKRITWKSEFSLIYTRFAIDIVYTFFVPHNKI 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,613
Number of Sequences: 27780
Number of extensions: 307025
Number of successful extensions: 1038
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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