Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0053
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 116 1e-26
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 115 2e-26
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ... 99 2e-21
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 60 1e-09
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 60 1e-09
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 60 1e-09
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 59 2e-09
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 59 2e-09
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 59 2e-09
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 59 2e-09
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 59 2e-09
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 58 3e-09
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 58 3e-09
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 54 6e-08
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 6e-08
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 6e-08
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 53 1e-07
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 48 5e-06
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 47 1e-05
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 46 1e-05
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 46 2e-05
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 46 2e-05
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 44 7e-05
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 42 4e-04
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 41 5e-04
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 41 6e-04
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 40 0.001
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 39 0.003
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 38 0.003
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 38 0.003
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 38 0.004
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 35 0.031
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 35 0.031
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 35 0.041
At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family pro... 33 0.13
At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family pro... 33 0.13
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 33 0.17
At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family pro... 33 0.17
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro... 32 0.29
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 31 0.38
At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A... 31 0.51
At2g39740.1 68415.m04880 expressed protein 30 0.89
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 29 2.0
At4g22400.1 68417.m03237 expressed protein 29 2.7
At3g60630.1 68416.m06784 scarecrow transcription factor family p... 29 2.7
At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family pro... 29 2.7
At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family pro... 29 2.7
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 29 2.7
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 28 3.6
At3g44610.1 68416.m04796 protein kinase family protein similar t... 28 4.7
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 27 6.2
At1g23670.2 68414.m02987 expressed protein contains Pfam profile... 27 6.2
At1g23670.1 68414.m02986 expressed protein contains Pfam profile... 27 6.2
At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,... 27 8.3
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 116 bits (278), Expect = 1e-26
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y L +PV +V A P P++ILEWHYV++G E +P+ GG+Y+ KI FP E+P+KPP I M
Sbjct: 14 YRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITM 73
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
TPNGRF T ++CLS++DFHP++
Sbjct: 74 TTPNGRFMTQKKICLSMSDFHPES 97
Score = 84.6 bits (200), Expect = 4e-17
Identities = 46/105 (43%), Positives = 62/105 (59%)
Frame = +2
Query: 137 YFPKGISVQTTFDLHDNTEWQVQDKHTIVPQYYRLSSGHWNPAWSISTILTGLLSFMLEK 316
Y P GI++ T N + Q K + + S WNP WS+S+ILTGLLSFM++
Sbjct: 66 YKPPGITMTTP-----NGRFMTQKKICLSMSDFHPES--WNPMWSVSSILTGLLSFMMDT 118
Query: 317 TPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEIEQQ 451
+PT GS+ T+ +K+ LA SL N K F +LFPEYVE+ QQ
Sbjct: 119 SPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQ 163
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 115 bits (277), Expect = 2e-26
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y L +PV +V A P P++ILEWHYV++G E +P+ GG+Y+ KI FP E+P+KPP I M
Sbjct: 14 YRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITM 73
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
TPNGRF T ++CLS++DFHP++
Sbjct: 74 TTPNGRFVTQKKICLSMSDFHPES 97
Score = 87.4 bits (207), Expect = 6e-18
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYV 433
WNP WS+S+ILTGLLSFM++ +PT GS+ TS +K+ LA SL N K+ F +LFPEYV
Sbjct: 98 WNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYV 157
Query: 434 EEIEQQLKQRQEA 472
E+ QQ +EA
Sbjct: 158 EKYSQQQVAEEEA 170
>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
similar to Non-Canonical UBiquitin Conjugating Enzyme 1
(NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 309
Score = 99.1 bits (236), Expect = 2e-21
Identities = 35/68 (51%), Positives = 53/68 (77%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLCL 227
P+ NI EW + ++GP + +EGG YH +I P ++PFKPPS ++TPNGRF+TNT++CL
Sbjct: 35 PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICL 94
Query: 228 SITDFHPD 251
SI+++HP+
Sbjct: 95 SISNYHPE 102
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 HWNPAWSISTILTGLLSFM-LEKTPTLGSIETSEYQKRCLAAESLE 385
HW P+WS+ T L L++FM LGS++ + ++R LA +S E
Sbjct: 103 HWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRE 148
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 43 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 102
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 103 VFHPNINSNGSICLDI 118
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
L DP P +A P N+ W + GP +PYEGG + IIFP ++PFKPP + T
Sbjct: 48 LNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKT 106
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGNICLDI 88
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNVNSNGSICLDI 88
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 15 KNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP- 191
K+ P + A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 15 KDPPTSCIFAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKV 74
Query: 192 -NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 75 FHPNINSNGSICLDI 89
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 58.4 bits (135), Expect = 3e-09
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
+NI EW V++GP+ +PYEGG ++ I FP ++PFKPP TP
Sbjct: 34 NNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTP 78
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ +W + GP SP+ GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ +W + GP SP+ GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT----PNGRFKTNTRLC 224
+NI +W ++KGP ++PYEGG + P +P +PP + +T PN FKT +C
Sbjct: 32 TNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTG-EIC 90
Query: 225 LSI 233
L I
Sbjct: 91 LDI 93
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 53.2 bits (122), Expect = 1e-07
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ ++ GPE +P++GG + + F ++P KPP +
Sbjct: 13 FKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 47.6 bits (108), Expect = 5e-06
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPS-NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
++ P +A PV +I W + GP SPY GG + I F ++PFKPP + T
Sbjct: 13 MQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKT 72
Query: 189 P--NGRFKTNTRLCLSI 233
+ + +CL I
Sbjct: 73 KVYHPNIDSKGSICLDI 89
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
NI EW + GP + YEGG+++ + FP+ +P PP++ + + ++ R+C+SI
Sbjct: 65 NIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISI 124
Query: 234 TDFHP 248
HP
Sbjct: 125 --LHP 127
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 84 VKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTG 257
++GPE + Y G ++ KI P +PF+PP + TP + + R+CL I + P
Sbjct: 51 IEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPK-- 108
Query: 258 TLLGLFLRSLQVC*VLCWRRLL 323
G + SL + VL RLL
Sbjct: 109 ---GAWQPSLNISTVLTSMRLL 127
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 248 GHWNPAWSISTILTGLLSFMLEKTPTLG 331
G W P+ +IST+LT + + E P G
Sbjct: 109 GAWQPSLNISTVLTSMRLLLSEPNPDDG 136
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
NI EW + GP + YEGG+++ + FP+ +P PP++ + + + R+C+SI
Sbjct: 33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISI 92
Query: 234 TDFHP 248
HP
Sbjct: 93 --LHP 95
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 45.6 bits (103), Expect = 2e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P P NI W V GP PYE G + + P ++P++PP I
Sbjct: 54 PSPENIFRWEATVNGPVGCPYEKGVFTVSVHIPPKYPYEPPKI 96
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
N+ +W + GP + YEGG+++ + FP +P PP++ + + ++ ++C+SI
Sbjct: 34 NVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISI 93
Query: 234 TDFHP 248
HP
Sbjct: 94 --LHP 96
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 30 PYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P ++A P NI W + G + + +EG Y + F ++PFKPP +
Sbjct: 53 PGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKV 101
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +3
Query: 15 KNDPVPYV----TAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
KN P +V T + N++ WH + G + +EGG++ + F ++P KPP
Sbjct: 19 KNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTMHFSEDYPSKPPKCKF 78
Query: 183 ITPNGRFKTNT----RLCLSI 233
P G F N +CLSI
Sbjct: 79 --PQGFFHPNVYPSGTVCLSI 97
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
++ ++ GP +SPYEGG + ++ P E+P P + +T + R+CL I
Sbjct: 4 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDI 59
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 84 VKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI--TDFHPD 251
++GP +PYE G + K+ +FP PP Y +T + +N +C++ D++P
Sbjct: 46 IEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPS 105
Query: 252 TG 257
G
Sbjct: 106 LG 107
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 30 PYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P ++A P NI W + G + + +EG Y + F ++PFK P +
Sbjct: 54 PGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKV 102
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
P N+ + GP +PYEGG + I P +PF+PP + T
Sbjct: 27 PKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFST 73
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 45 EPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
E + + E++ GP+ S Y+GG + ++ P +P+K PS+ IT
Sbjct: 23 ETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFIT 70
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 45 EPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
E + + E+ GP+ S YEGG + ++ P +P+K PS+ IT
Sbjct: 23 EMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFIT 70
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 35.1 bits (77), Expect = 0.031
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 66 LEWHYVV-KGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
L+ YV GP S Y+GG + K+ P +P+K PS+
Sbjct: 29 LQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSV 66
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ND ++ S + V+ G E +PY G + I FP +P PP+++ +
Sbjct: 283 LENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSG 342
Query: 192 NGRFKTNT----RLCLSI 233
R N ++CLS+
Sbjct: 343 GLRINPNLYNCGKVCLSL 360
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLC 224
V+ G E +PY G + I FP +P PP++Y + R N C
Sbjct: 952 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVYYHSGGLRINPNLYNC 999
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLC 224
V+ G E +PY G + I FP +P PP ++ + R N C
Sbjct: 640 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPKVHYHSGGLRINPNLYKC 687
>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 907
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 90 GPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSITDFHPDTG 257
G +PY G + I+ P ++P +PP ++ + R N R+CLS+ + +G
Sbjct: 700 GAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLLNTWSGSG 759
Query: 258 T 260
T
Sbjct: 760 T 760
>At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTV 83
>At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 145
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 48 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTV 82
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSI 233
V+ G + +PY G + I FP +P PP ++ + R N ++CLS+
Sbjct: 367 VIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLSL 421
>At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 158
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + YEG + K+ +E+P PP++
Sbjct: 47 WTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTV 81
>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 159
Score = 31.9 bits (69), Expect = 0.29
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + YEG + K+ +++P PP++
Sbjct: 47 WTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTV 81
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family protein
low similarity to ubiquitin-conjugating BIR-domain enzyme
APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating
enzyme [Mus musculus] GI:3319990; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1102
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSI 233
V+ G +PY+ G + P ++P PPS Y + R N ++CLS+
Sbjct: 885 VIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGKVCLSL 939
>At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'alpha) similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 495
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 368 AAESLEINIKNKMFCELFPEYVEEIEQQLKQRQ 466
A L NIK +MF E+ PE EE +QQ +++Q
Sbjct: 431 AVHGLSANIK-RMFMEMDPELFEECQQQYEEKQ 462
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 31 HMLRPNLCRPTYWNGITSLKGRRKVPTKG 117
HM N RP Y NG+ S + K+P++G
Sbjct: 436 HMNGVNSARPAYTNGVNSARPPSKIPSQG 464
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +3
Query: 189 PNGRF---KTNTRLCLSITDFHPDTGTLLG 269
PNG F +T + C+ ITD+ P G LLG
Sbjct: 33 PNGSFPSLRTVAKKCVVITDWDPQPGALLG 62
>At4g22400.1 68417.m03237 expressed protein
Length = 327
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 203 QDKHTIVPQYYRLSSGHWNPAWSISTIL-TGLL-SFMLEK-TPTLGSIETSEYQKRC-LA 370
+D +T++ Y +SG W WS++++L G+ ++ +E +P+ I + KR
Sbjct: 182 RDTYTLLIYYVAKTSGRWEQNWSVASMLVVGIFDTWYIESISPSPDKISIEIWPKRYDFT 241
Query: 371 AESLEINIKN 400
++ E N+ N
Sbjct: 242 FQTQEWNVSN 251
>At3g60630.1 68416.m06784 scarecrow transcription factor family
protein scarecrow-like 6, Arabidopsis thaliana,
EMBL:AF036303
Length = 623
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -1
Query: 233 NTEAQSCV---CLEPAIRCYHVNR-RWFERKFPWEN 138
N EA + + C++P+I+ NR RW ER PW +
Sbjct: 527 NAEAATSIERFCVQPSIQKLLTNRYRWMERSPPWRS 562
>At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 147
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 WHYVVKGPEK-SPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 49 WTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTV 84
>At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 WHYVVKGPEK-SPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 48 WTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTV 83
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRC 364
W+PA ++S+I +LS + T + Y K C
Sbjct: 107 WSPAMTVSSICISILSMLSSSTEKQRPTDNDRYVKNC 143
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 6 LRLK-NDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGY 122
LRLK +DP+ + A PS L+W K P SP GG+
Sbjct: 240 LRLKRDDPLTAIIAHTDPSEPLKWELKQK-PGLSPPRGGF 278
>At3g44610.1 68416.m04796 protein kinase family protein similar to
viroid symptom modulation protein (protein
kinase)[Lycopersicon esculentum] gi|7672777|gb|AAF66637;
contains protein kinase domain, Pfam:PF00069
Length = 451
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 230 TEAQSCV---CLEPAIRCYHVNRRWFERKFPWENNLSMIISPFVGTFLRPFNDVMPFQYV 60
T + SC+ C+ PA+ C+H R ++K NN +++ V DV +V
Sbjct: 263 TTSSSCMIPNCIVPAVSCFHPRIRRRKKKTDHRNNGPELVAEPV--------DVRSMSFV 314
Query: 59 GRHRF 45
G H +
Sbjct: 315 GTHEY 319
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 146 KGISVQTTFDLHDNTEWQVQDKHTIVPQYYRLSSGHWNPAWSISTILTGLLSFMLEKTPT 325
K + V T FD+HD E+ ++ I ++ + H + + + + + L K +
Sbjct: 98 KNVGVTTVFDVHDEAEFLIR---VIGSGCSKIDTNHLDSEYRVENVASLELDDSF-KLGS 153
Query: 326 LGSIETSEYQKRCLAAE--SLEI 388
G++E E +K + + SLEI
Sbjct: 154 SGNVENLESEKNVVLVDHGSLEI 176
>At1g23670.2 68414.m02987 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 264
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 389 NIKNKMFCELFPEYVEEIEQQLK 457
N+K K E +PE EE+++QLK
Sbjct: 25 NVKTKSVSETYPENREELKKQLK 47
>At1g23670.1 68414.m02986 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 219
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 389 NIKNKMFCELFPEYVEEIEQQLK 457
N+K K E +PE EE+++QLK
Sbjct: 25 NVKTKSVSETYPENREELKKQLK 47
>At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 741
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 209 CLEPAIRCYHVNRRWFE 159
C EP+ R YHV R WF+
Sbjct: 696 CGEPSQRWYHVPRSWFK 712
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,885
Number of Sequences: 28952
Number of extensions: 286513
Number of successful extensions: 936
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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