Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0048
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    61   1e-10
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   4.8  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   6.3  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 32/67 (47%), Positives = 37/67 (55%)
 Frame = -2

Query: 450 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFMGVNI 271
           DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +F+GVNI
Sbjct: 371 DIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNI 429

Query: 270 TFFPQLF 250
            F PQ F
Sbjct: 430 VFGPQHF 436



 Score = 29.9 bits (64), Expect = 0.22
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -3

Query: 497 FTVGGLTGVILANS 456
           FT+GGLTGVIL+NS
Sbjct: 355 FTIGGLTGVILSNS 368



 Score = 29.1 bits (62), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPD 206
           FLGL G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 310 KNSIFYNIYGSKYN 269
           KNS+F+N  G KYN
Sbjct: 39  KNSLFHNTLGGKYN 52


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 232 GFPLNLKKLWKKCYIYSHKYCK 297
           G      K WKKC     +YCK
Sbjct: 52  GIQTGFSKYWKKCTYGIREYCK 73


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 349 SFIYRPFIKFLYTKNSIFYNIYGS 278
           S++Y+PFIK  ++ N   + I  S
Sbjct: 11  SYLYQPFIKAYFSLNMAIFEINNS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,999
Number of Sequences: 5004
Number of extensions: 23298
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)