Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0048
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 232 GFPLNLKKLWKKCYIYSHKYCKKL 303
           G P   + +W    IY +KY +++
Sbjct: 304 GLPFPQRPIWSNFPIYKYKYIREI 327


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 232 GFPLNLKKLWKKCYIYSHKYCKKL 303
           G P   + +W    IY +KY +++
Sbjct: 304 GLPFPQRPIWSNFPIYKYKYIREI 327


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 376 NYWGIY*LISFIYRPFIKFLYTKNSIFYNIYGSKY-NIFSTT 254
           N W +Y L   +Y     F  T N I YN+  +KY N F  T
Sbjct: 294 NQW-VYPLTGCLYY----FSTTINPILYNVMSAKYRNAFKET 330


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 78  SHHQLNDIKIYHQQNIHIM 22
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,715
Number of Sequences: 438
Number of extensions: 1656
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)