Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0047
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    30   0.35 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.8  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   7.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.6  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   7.6  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 6/32 (18%)
 Frame = -1

Query: 468 ICIFLLFCS------FVGGFV*QRFIINRQQL 391
           + +FLLFC+      FVGGFV QR ++N + L
Sbjct: 207 VSVFLLFCAIAFLAYFVGGFVYQRVVLNARGL 238


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 304  LIEDSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKAL 420
            L E S+NY+ LE    ++   ++    +KQLL   ++ L
Sbjct: 887  LAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHTENEEL 925


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 322 NYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTE 450
           N E   N +R   + +  KPKK  LLS N   LL K + +  E
Sbjct: 38  NIENFNNQERSDLEHIHSKPKKDSLLSWN--ILLKKGSYKENE 78


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 551 YYGPCRTIVRQHQDAHALYFIVSG 622
           +Y    TIVRQ   A  LY+I+ G
Sbjct: 536 FYKKGTTIVRQGDHADGLYYIIDG 559


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 331 GLENVKRRVQQAMRGKP-KKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVI 507
           G   +K+R    +R K   + QL  +  ++   + A   TE  KNT   +         +
Sbjct: 57  GQTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQL 116

Query: 508 QSRKEEISGSDVLQILRPVSDYRTSA 585
           +S+ + +S   + ++   + DY  +A
Sbjct: 117 KSQSKNVSIEKIEKLQDEIQDYMDAA 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,217
Number of Sequences: 5004
Number of extensions: 48831
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)