Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0047
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32605.1 68418.m03879 hypothetical protein                          31   0.53 
At4g00510.1 68417.m00070 cyclic nucleotide-binding domain-contai...    31   0.93 
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ...    30   1.6  
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co...    29   2.1  
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    28   6.5  
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    28   6.5  
At5g38690.1 68418.m04678 expressed protein                             27   8.6  
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans...    27   8.6  

>At5g32605.1 68418.m03879 hypothetical protein
          Length = 365

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = +1

Query: 313 DSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*N 492
           D+  Y  LE V RR     +GK ++ Q+ +I+D++ +       T      Y+ELL    
Sbjct: 250 DANEYVALEEVIRR-----QGKVEENQVKNIDDQSKIWASLRRVTMDSSRKYVELLD--R 302

Query: 493 VLSVIQSRKEEISGSDVL 546
           +L + +  KEE S   VL
Sbjct: 303 ILDLDKKSKEEDSSPYVL 320


>At4g00510.1 68417.m00070 cyclic nucleotide-binding
           domain-containing protein contains Pfam profile: PF00027
           cyclic nucleotide-binding domain
          Length = 175

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 521 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGEV 628
           K+++ V  FK Y     +VR++Q+   +YF++ G+V
Sbjct: 25  KRISEVVVFKGYDRGDYVVRENQNVDGVYFLLQGQV 60


>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/92 (28%), Positives = 40/92 (43%)
 Frame = +1

Query: 274 GRLVMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQ 453
           G ++     WL+E+ +NY GL   +RR       K  K  L  I +    N   N   E+
Sbjct: 35  GEVLTMYEQWLVENGKNYNGLGEKERRF------KIFKDNLKRIEEH---NSDPNRSYER 85

Query: 454 EKNTYIELLAA*NVLSVIQSRKEEISGSDVLQ 549
             N + +L A     S +  + E+ S SDV +
Sbjct: 86  GLNKFSDLTADEFQASYLGGKMEKKSLSDVAE 117


>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
           contains Pfam profiles: PF02551 acyl-CoA thioesterase,
           PF00027 cyclic nucleotide-binding domain
          Length = 427

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 521 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGE 625
           KK+A V   K YG    +VR+ Q     YFI+ GE
Sbjct: 25  KKIAQVVVPKRYGKGDYVVREDQTWDGCYFILQGE 59


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
           GRGG +K+ELD   L K+ F   V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
           GRGG +K+ELD   L K+ F   V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125


>At5g38690.1 68418.m04678 expressed protein
          Length = 572

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 271 LGRLVMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKKKQL 396
           LG LVM N      DS+N E +E  K   ++    K K+KQL
Sbjct: 397 LGTLVMRNCI----DSQNIESVERKKEAKEKINAAKDKEKQL 434


>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
           transcription factor DEFH125 - Antirrhinum majus,
           PIR:T17029; contains Pfam domain PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); contains Pfam domain PF01486: K-box region
          Length = 240

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 328 EGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPAN 438
           E L+N++ +++ ++RG   KK  + I +  +LN+  N
Sbjct: 121 EALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,467
Number of Sequences: 28952
Number of extensions: 242417
Number of successful extensions: 565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)