Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 457 WRCLYNW 477
           WRCLY W
Sbjct: 161 WRCLYRW 167


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 397 NVYFSYSISNVTAAPQS 347
           N+Y+S+ IS+  A P+S
Sbjct: 178 NLYYSFYISDKAARPRS 194


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 296 LSQFDYKTWKNNRRLKPR 349
           LS+   K W  NRR K R
Sbjct: 196 LSERQIKIWFQNRRAKER 213


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 296 LSQFDYKTWKNNRRLKPR 349
           LS+   K W  NRR K R
Sbjct: 195 LSERQVKIWFQNRRAKER 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,317
Number of Sequences: 336
Number of extensions: 2820
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)