Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)                38   0.008
SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)                   38   0.008
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)            29   2.9  
SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)                   28   6.6  
SB_49069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_31881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)                 27   8.7  
SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_29264| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)                       27   8.7  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_44727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)                      27   8.7  
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)                    27   8.7  
SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)                 27   8.7  

>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 WLRDHCRCSQCYHANTFQRAKHILELPDSKILTLQFDKNSL 248
           +LRDHC CS CYH  + QR  H+  L D K+L      N +
Sbjct: 85  YLRDHCLCSTCYHPTSEQRLTHMKNL-DLKVLPSNVHVNDI 124


>SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +2

Query: 257 WDDKHTTEFKADFLSQFDYKTWKNNRRLKPRLWRGCNVADRIAKVHVDEF-LDSDDSSK- 430
           W D H T++K+ +L+Q  Y   K N++L+ +        +RI    + EF  D+  ++K 
Sbjct: 17  WSDGHATDYKSSWLAQHAY---KGNKKLRVKEELFLWDKERINSTTLPEFSFDAVTTNKK 73

Query: 431 ---EVFQSLLDYGVAFITGVQPSAEATETCAK 517
              E+ ++++ YG AF+        A E  AK
Sbjct: 74  DLFEISKAIIKYGFAFVNDTPTELSAVEKLAK 105



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 484 TKRGSYRNMCKALGG-IQHTIFGATWEFTT-VADHADTAY 597
           T+  +   + K+LG  ++ T FG  W F+  V DHADTAY
Sbjct: 95  TELSAVEKLAKSLGCFVRETHFGRLWAFSNEVMDHADTAY 134


>SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)
          Length = 210

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 FEDCWLRDHCRCSQCYHANTFQRAKHILEL 203
           F   +LRDHC C+ CYH  + QR  +I  L
Sbjct: 63  FPYMYLRDHCACASCYHQTSQQRLNYITNL 92


>SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)
          Length = 448

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 FEDCWLRDHCRCSQCYHANTFQRAKHILEL 203
           F   +LRDHC C+ CYH  + QR  +I  L
Sbjct: 89  FPYMYLRDHCACASCYHQTSQQRLNYITNL 118


>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = -1

Query: 436 YFL*TVVRVKKLINVYFSYSISNVTAAPQSRLQSAIVFPSFIIELRQKVRFEFCSVLIVP 257
           + + T + +++ I +        +  A + +    I++   I+    ++    C +LIV 
Sbjct: 337 FLIITAITIERYIAIKLHLRFPGIVTASRVKCLVLIIWALVILSAIVRLHCTTCKILIV- 395

Query: 256 LIVRLFLSNCNVSIF 212
           +++ LFL N +V IF
Sbjct: 396 ILIALFLFNLSVIIF 410


>SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 84  VNFENGPSIPFEDCWLRDHCRCSQCYHANTFQR 182
           V+++N     +   +LRD+C+C +CY++   QR
Sbjct: 51  VHWKNNQINRYPYVYLRDNCQCPKCYNSLLLQR 83


>SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 84  VNFENGPSIPFEDCWLRDHCRCSQCYHANTFQR 182
           V+++N     +   +LRD+C+C +CY++   QR
Sbjct: 51  VHWKNNQINRYPYVYLRDNCQCPKCYNSLLLQR 83


>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
          Length = 1091

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/48 (20%), Positives = 28/48 (58%)
 Frame = +2

Query: 2   KRWNSVSDSMKTVRKK*KTSSLLRERYCELREWPFDSL*RLLAQRPLQ 145
           K+W +++  +    K+  +++  ++R  EL +W   ++ ++L QR ++
Sbjct: 854 KKWENIAQKLSKRLKEALSAAAEKDRQHELEKWRLQNMVKILVQREIE 901


>SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)
          Length = 606

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 343 LQSAIVFPSFIIELRQKVRFEFCSVLIVPLIVRLFLSNCNVSIFES 206
           L S++VFP+   +   K   E C + +VP   RL L    V I +S
Sbjct: 366 LLSSLVFPTIATKALPKAGGEICLLQLVPKPYRLQLKTSRVGIQKS 411


>SB_49069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 75  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 106


>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -1

Query: 529 FLLKLCTCFCSFRAWLHTSYKGNAIVKKRLKYFL*TVVRVKKLINVYFSYSISNVTAAPQ 350
           F+ KL T F +    +   +  NA++KKRL YFL  V+ +   I       +S   + P 
Sbjct: 195 FIPKLNTFFGNLSKKMFAEWLPNAVLKKRL-YFLWIVIFIGLTIGFICVIFVSPKISLPS 253

Query: 349 SR 344
           S+
Sbjct: 254 SK 255


>SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 301 CYIRDMFVKCSNVHNKNTKNAANHNLVLPKAR 332


>SB_31881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 75  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 106


>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
          Length = 552

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 506 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 537


>SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 159 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 190


>SB_29264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 252

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 206 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 237


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 407 LDSDDSSKEVFQSLLDYGVAFITGVQPSAEATETCAKL*EEFNTLFL 547
           ++ D SS++ +Q+L D     + G+Q S +A E  AKL  +++ + +
Sbjct: 765 IEQDPSSEKSYQALRDTTHYLLHGLQYSNQAKEEQAKLIPKYHEIMI 811


>SB_44727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)
          Length = 164

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
          Length = 452

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 386 KVHVDEFLDSDDSSKEVFQSLLDYGVAFITGVQP 487
           + HVD  L   D S  V+Q +LD G   +  ++P
Sbjct: 65  RAHVDATLRGQDISAGVYQEILDLGGTGVIALKP 98


>SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
          Length = 407

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 215
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 366 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,532
Number of Sequences: 59808
Number of extensions: 336132
Number of successful extensions: 894
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)