Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0045
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi... 28 4.1
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi... 28 4.1
At4g32850.6 68417.m04675 nucleotidyltransferase family protein c... 28 5.4
At4g32850.5 68417.m04674 nucleotidyltransferase family protein c... 28 5.4
At4g32850.4 68417.m04671 nucleotidyltransferase family protein c... 28 5.4
At4g32850.3 68417.m04673 nucleotidyltransferase family protein c... 28 5.4
At4g32850.2 68417.m04672 nucleotidyltransferase family protein c... 28 5.4
At4g32850.1 68417.m04676 nucleotidyltransferase family protein c... 28 5.4
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c... 28 5.4
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c... 28 5.4
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 27 7.2
>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 581
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 335 RLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSLLDYGVAFITG 478
R+ R+ +GCN ++ K+H ++ +F LL + +TG
Sbjct: 6 RVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTG 53
>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
gamma) (Polynucleotide adenylyltransferase gamma) (SRP
RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
profiles PF04926: Poly(A) polymerase predicted RNA
binding domain, PF04928: Poly(A) polymerase central
domain
Length = 483
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 421 QFKGSISIAS*LWRCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
Q S+ + L RC+ W A +RG Y N+ LGG+ I A
Sbjct: 168 QLVPSLELFQSLLRCVKLW-AKRRGVYGNLNGFLGGVHMAILAA 210
>At4g32850.6 68417.m04675 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.5 68417.m04674 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.4 68417.m04671 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 730
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.3 68417.m04673 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 735
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.2 68417.m04672 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 738
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.1 68417.m04676 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 741
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 800
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258
>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 787
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
RCL W A KRG Y N+ LGG+ + A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258
>At3g62820.1 68416.m07058 invertase/pectin methylesterase
inhibitor family protein low similarity to
pectinesterase from Arabidopsis thaliana SP|Q43867,
Lycopersicon esculentum SP|Q43143; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 194
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 80 TVLSTKMTFSIFFALFSLNPT 18
T +S+ +TF++ F L SLNPT
Sbjct: 3 TPMSSSITFALVFFLLSLNPT 23
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,394
Number of Sequences: 28952
Number of extensions: 233513
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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