Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0041
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   136   3e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    91   1e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    90   2e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    70   3e-13
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.45 
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.79 
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   2.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   3.2  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   4.2  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   4.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.6  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   5.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   9.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.7  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   9.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  136 bits (328), Expect = 3e-33
 Identities = 59/78 (75%), Positives = 68/78 (87%)
 Frame = +3

Query: 237 GQVRPAAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 416
           G+  P AV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+V
Sbjct: 57  GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116

Query: 417 LDVVRKEAEGCDCLQGFQ 470
           LDVVR+EAE CD LQGFQ
Sbjct: 117 LDVVRREAEACDALQGFQ 134



 Score =  109 bits (262), Expect = 3e-25
 Identities = 49/74 (66%), Positives = 58/74 (78%)
 Frame = +1

Query: 70  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 249
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 250 PRL*WWTLSLEPWT 291
           PR     + LEP T
Sbjct: 61  PRA--VLVDLEPGT 72



 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 509 GTLLISKIREEYP 547
           GTLL+SKIREEYP
Sbjct: 148 GTLLLSKIREEYP 160


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 37/78 (47%), Positives = 55/78 (70%)
 Frame = +3

Query: 234 RGQVRPAAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDS 413
           +G+  P ++ VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++DS
Sbjct: 62  QGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDS 121

Query: 414 VLDVVRKEAEGCDCLQGF 467
           VL+ +R+ A+ C  LQGF
Sbjct: 122 VLERIRRMADNCSGLQGF 139



 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +1

Query: 70  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL------ERINVYYNEA 231
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++        +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 232 SGGKYVPR 255
             GK+VPR
Sbjct: 61  GQGKFVPR 68


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 37/78 (47%), Positives = 53/78 (67%)
 Frame = +3

Query: 234 RGQVRPAAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDS 413
           +G+  P ++ VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD 
Sbjct: 58  QGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDE 117

Query: 414 VLDVVRKEAEGCDCLQGF 467
           V D +R+ A+ C  LQGF
Sbjct: 118 VTDKIRRIADNCSGLQGF 135



 Score = 51.6 bits (118), Expect = 7e-08
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 70  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE--RINVYYNEASGGK 243
           MREI+ I  GQ G QIG   WE+   EHGI   G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 244 YVPR 255
           YVPR
Sbjct: 61  YVPR 64


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 27/75 (36%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +3

Query: 249 PAAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLD 422
           P A+++DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D
Sbjct: 62  PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMD 120

Query: 423 VVRKEAEGCDCLQGF 467
           ++ +EA+G D L+GF
Sbjct: 121 MIDREADGSDSLEGF 135



 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = +1

Query: 73  REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 252
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 253 R 255
           R
Sbjct: 63  R 63


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -3

Query: 513 VPYQIQYLLPENELAENPADNRSLLLLF*LHPVPNQPVQPPLCNVLSPSYSP 358
           + Y   YL P   +A +P  N  L      H  P  P   PL N +SP Y P
Sbjct: 24  INYTGPYLTPSGTMAYHPG-NAPLFTQAPPHTNPQGPPPFPLFNSISPVYDP 74


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 361 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 266
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 303 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 404
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 138 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 34
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 35  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 193
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 372 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 461
           A+GH   G ELV +  D +RK++E    L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 501 IQYLLPENELAENPADNRSLL 439
           +QY+L +NEL  NP +  ++L
Sbjct: 342 VQYILEQNELGRNPYNTTNVL 362


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 35  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 193
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 95  AWMWTISLMIALKIWNPPNRI 33
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 411 NQPVQPPLCNVLSPSYSPPQT 349
           N+P +PP+ N  +    PPQT
Sbjct: 86  NEPAKPPIPNAATKPTFPPQT 106


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 49  FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 192
           F + S I      I    C  +    +W+V+    G+  TGA S  SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -1

Query: 458 QTIAAFCFFSNYIQYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLPKRPGTDG 291
           Q  AA+  +S++     + FSP   +   P +  P   ++ V     LP+ P + G
Sbjct: 109 QNSAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDSFRPLPETPVSPG 164


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 326 SEDLPKRPGTDGVHGSRLKVHHHSR 252
           +E++P+   T    G +   HHHSR
Sbjct: 283 TEEIPQFSKTGHSRGRKFNFHHHSR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,543
Number of Sequences: 5004
Number of extensions: 46553
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)