Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0041
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.88 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.88 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.88 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 405 VDSVLDVVRKEAEGCDCLQG 464
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 314 PKRPGTDGVHGSRLKVHH 261
           P+ PGT  ++ ++LK HH
Sbjct: 139 PREPGTPRINFTKLKRHH 156


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -1

Query: 419 QYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLPKRPGTDGVHGSRLK 270
           Q+     SP+   S+ P  P  ++  DE+ +   L     +DG    + K
Sbjct: 127 QHNNGYASPMSTSSYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKK 176


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 184 DSDLQLERINVYYNEASGGKYVPRL*W 264
           D+ L+   I  Y N+  GG++V  L W
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLIW 98


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 146 TSTALTPRVLTAATPTCSLNASMST 220
           T+T  T    T  TP  + NAS +T
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATT 688


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 302 GTDGVHGSRLKVHHHSRGTYLPP 234
           G DG + + + V H+    Y+PP
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPP 172


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 302 GTDGVHGSRLKVHHHSRGTYLPP 234
           G DG + + + V H+    Y+PP
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPP 172


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 302 GTDGVHGSRLKVHHHSRGTYLPP 234
           G DG + + + V H+    Y+PP
Sbjct: 82  GFDGTYQTSVVVTHNGSCLYVPP 104


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 252 RDVLAP*SFVIVDIDAFKLQVGVAAVSTRGVNAVLV 145
           RD++        +++  K  VG   V T+G NAV V
Sbjct: 117 RDLIVDRDVPTWEVNILKSIVGQLQVDTQGENAVKV 152


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 411 NQPVQPPLCNVLSPSYSPPQTVRRRSCPVGRFAQTARNGRSP 286
           ++PV+PP      P +  P+  + +S P     +   N  SP
Sbjct: 335 SEPVEPPRRKNNCPLHCKPELGQSQSSPKFVARREESNSSSP 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,466
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)