Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0040
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.7  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.4  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 181 THEFLLDVLSDLSIVEEVAVFSDFPWMKKILS 276
           TH+ + D+ + L   +E   FS FP  KK++S
Sbjct: 619 THKDIFDLQNILRYCDERGDFSSFPSFKKLIS 650


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 213 ITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNG 106
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 154 EATNRIGLLTHEFLLDVLSDLS 219
           +A N   + +HE LL VL+DLS
Sbjct: 6   KAKNPASIFSHETLLHVLNDLS 27


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 239 TATSSTMLRS-LNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 90
           +ATSS++  S LN++   +  S  I    S  TP TSS S    T  +  S
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,204
Number of Sequences: 5004
Number of extensions: 29755
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)