Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0040
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 33 0.12
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 30 0.81
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 30 0.81
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 30 0.81
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 3.3
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.6
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 27 7.6
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 27 7.6
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 27 7.6
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 27 7.6
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 255 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGKD 100
+ V K ++LH Q EE F +Q TIR A +D K+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
GHAEA +F+ R + ++++ ++T Y E+E+ + +R
Sbjct: 222 GHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
GHAEA +F+ R + ++++ ++T Y E+E+ + +R
Sbjct: 222 GHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
GHAEA +F+ R + ++++ ++T Y E+E+ + +R
Sbjct: 222 GHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 252 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGK 103
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 252 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGK 103
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 148 TREATNRIGLLTHEFLLDVLS 210
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 148 TREATNRIGLLTHEFLLDVLS 210
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 148 TREATNRIGLLTHEFLLDVLS 210
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 148 TREATNRIGLLTHEFLLDVLS 210
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 201 IEEEFVSQQADTIRSLAGHTSDXKRFITENNGKDLSLAVY 82
IEE+F S+ AD ++ L + KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 201 IEEEFVSQQADTIRSLAGHTSDXKRFITENNGKDLSLAVY 82
IEE+F S+ AD ++ L + KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 148 TREATNRIGLLTHEFLLDVLS 210
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 389 DFSSHTTXKGDKGSXXTVEVGHEIGALAKALDTQKQLAERIFFIHG 252
D S+HTT S TVE H++ ++A ++ T + E + FI G
Sbjct: 627 DSSAHTTPI----STRTVESKHDVTSMASSVSTWHEEIEALAFIDG 668
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,781,101
Number of Sequences: 27780
Number of extensions: 166889
Number of successful extensions: 470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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