Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0040
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 148 TREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSDFPWMKKI 270
           + E+ N  GL    FL +V+SD   + +   F D   +K I
Sbjct: 802 SEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKIKTI 842


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 109 VVLGYEPLXVRGVTREATNRIGLLTHEFL 195
           VV+ YEP+   G  + AT +     HE L
Sbjct: 159 VVVAYEPVWAIGTGKTATPQQAQEVHEKL 187


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 258 PREVTKNSDLLHDAEITQY 202
           PR+  +N D LHD   T Y
Sbjct: 94  PRDFLQNLDALHDHLGTLY 112


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 371 TXKGDKGSXXTVEVGHEIGALAKALDTQKQLAERIFFIHGKSLKTATSSTMLRS 210
           T +G K      E+ + +  + K  +    L   I     +S K ATSS  LRS
Sbjct: 166 TGEGSKPIFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRS 219


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 371 TXKGDKGSXXTVEVGHEIGALAKALDTQKQLAERIFFIHGKSLKTATSSTMLRS 210
           T +G K      E+ + +  + K  +    L   I     +S K ATSS  LRS
Sbjct: 166 TGEGSKPIFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRS 219


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 371 TXKGDKGSXXTVEVGHEIGALAKALDTQKQLAERIFFIHGKSLKTATSSTMLRS 210
           T +G K      E+ + +  + K  +    L   I     +S K ATSS  LRS
Sbjct: 166 TGEGSKPIFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRS 219


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 258 PREVTKNSDLLHDAEITQY 202
           PR+  +N D LHD   T Y
Sbjct: 94  PRDFLQNLDALHDHLGTLY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,889
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)