Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0029
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.6
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 2.1
07_03_1393 - 26245105-26246862 28 3.6
04_03_0633 + 18208116-18208732,18209916-18210129 28 3.6
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.8
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 4.8
04_04_1304 + 32490971-32491552 28 4.8
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455... 27 6.3
02_01_0612 - 4573595-4573699,4574153-4574200,4574653-4575693,457... 27 6.3
02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600 27 8.4
01_06_0922 - 33022709-33023545 27 8.4
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 76 GLVVLGPEDWSEISVLNWSQKIS 8
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>07_03_1393 - 26245105-26246862
Length = 585
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 397 HPNHDSEQPPELLKTAVPRTRSEAQRALYVHT 302
+PN D++ PE L VP+ + R LY+ T
Sbjct: 467 YPNLDADTSPEALVDKVPKLIKQPMRNLYIAT 498
>04_03_0633 + 18208116-18208732,18209916-18210129
Length = 276
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = -2
Query: 288 SLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMAC 109
SLG NA+A+L+W+ R G D+ R T A R S+AR
Sbjct: 25 SLGVPPPPARNAVALLMWLGR-----RGGGAGVDAVDRARRLVRTRHDAARLASEARAVL 79
Query: 108 DTGGKASWLLKAW 70
G A L + W
Sbjct: 80 HGGAAALDLARRW 92
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEVTLSPFPSDAPLTSMDVERAL 325
SVS + R A A S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>04_04_1304 + 32490971-32491552
Length = 193
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 239 MRTAMAFEVTLSPFPSDAPLTSMDVERALSFAPRT 343
+RTA A +L P P +P S+D+ S+AP T
Sbjct: 49 IRTAAAASASLPPVPGYSPRMSIDMACTHSWAPYT 83
>12_01_0561 +
4550119-4550265,4550716-4550791,4551601-4551668,
4551951-4552039,4552136-4552313,4553096-4553229,
4553307-4553520,4553601-4553785,4553930-4554025,
4554105-4554231
Length = 437
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 295 SDEYGRRARVELRSAYVAPRSSRALEAVRCRG 390
SD YG A V S Y+AP+ S VR G
Sbjct: 58 SDGYGSHACVTPTSRYMAPKGSERYMTVRSNG 89
>02_01_0612 -
4573595-4573699,4574153-4574200,4574653-4575693,
4576088-4576164,4576265-4576657,4577230-4577382,
4577938-4578100
Length = 659
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -2
Query: 468 HGKRKTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHVRGAKLNARSTSILVRGA 289
H PF + L G+SP FP++ TT N+ Q++ RG N ++ + G
Sbjct: 415 HSSSADPF----STLVGESPQFPDLGRTT-NTWQTAVPSNIQDRGHNDNMSQATLHMNGP 469
Query: 288 SLGNGDSVT-SNAIAVL 241
+ S T SN I +L
Sbjct: 470 KIEPVSSFTSSNQIPLL 486
>02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600
Length = 292
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 339 VRGTAVFKSSGGCSLSWFGCWEMSATGRLIL*LAVRTVFFVFR 467
+ G+ + CS+ F C+E++A G +I L T FF+ R
Sbjct: 170 ILGSTLLALGSSCSVPLFWCYEITAWGLVI--LYAGTAFFLRR 210
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 262 SHAVSVPERRSSDEYGRRARVELRSAYVAPRSSRALEAVRCRGSDVGK 405
+HA+S +R ++ YG R+R SA PR + +VR S K
Sbjct: 141 AHAISRRDRAAAAAYGVRSRSARASASPPPRREQRDRSVRRSPSPAAK 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,565
Number of Sequences: 37544
Number of extensions: 234491
Number of successful extensions: 793
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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