Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0029
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.77 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 309 SILVRGASLGNGDSVTSNAIAVLIWVWR 226
           SI  R +++ +GD +T N + + + VWR
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWR 196


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 59  T*NNQAFKSQDALPPVS 109
           T + Q  KSQ +LPPVS
Sbjct: 286 TLSTQHAKSQASLPPVS 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -3

Query: 413 RRHFPTSEPRQRTASRALEDRGATYAERSSTRALRPYSSEERR 285
           +RH           S A++D    Y ++   +  +    EERR
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERR 181


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 386  RQRTASRALEDRGATYAERSSTRALRPY 303
            R RTA   +      Y E    R LRPY
Sbjct: 1154 RGRTAQLIIVQAENAYPEVELDRELRPY 1181


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 360 KSSGGCSLSWF 392
           +SSGG  L WF
Sbjct: 59  ESSGGVELGWF 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,856
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)