Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0025
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 0.62
U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin pr... 31 0.62
Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical p... 29 2.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.5
AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin ... 29 2.5
AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like ... 29 2.5
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 28 4.4
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z70266-1|CAB61045.1| 364|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF083646-1|AAC32857.1| 364|Caenorhabditis elegans putative pota... 27 7.7
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 27 7.7
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAILAAVGLFDY 593
N+P+ + ++ +++TPV P ++RLL L E LA +GL+D+
Sbjct: 97 NDPSLKEINLNNMKRTPV---PAIKRLLEALAYNEHCERISLANMGLYDH 143
>U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin
protein 2, isoform a protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAILAAVGLFDY 593
N+P+ + ++ +++TPV P ++RLL L E LA +GL+D+
Sbjct: 97 NDPSLKEINLNNMKRTPV---PAIKRLLEALAYNEHCERISLANMGLYDH 143
>Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAIL 569
++PN V +SG+++ PV V +LL L AE++R AA L
Sbjct: 173 DDPNKKGVIVSGVEEVPVRNRSDVFKLL-QLGAEKRRTAATL 213
>Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAIL 569
++PN V +SG+++ PV V +LL L AE++R AA L
Sbjct: 173 DDPNKKGVIVSGVEEVPVRNRSDVFKLL-QLGAEKRRTAATL 213
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = -1
Query: 589 SNKPTAANIAAIRCSSAVKYXRRRLTLGSPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNS 410
+ +PT + +S + +T SP T + +++ + P S ++
Sbjct: 425 TTEPTTTLTTSTASTSTTEPSTSTVTT-SPSTSPVTSTVTSSSSSSTTVTTPTSTESTST 483
Query: 409 SPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
SP + + +P TSTT + + +ST SSS+ S SS S
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = -1
Query: 589 SNKPTAANIAAIRCSSAVKYXRRRLTLGSPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNS 410
+ +PT + +S + +T SP T + +++ + P S ++
Sbjct: 425 TTEPTTTLTTSTASTSTTEPSTSTVTT-SPSTSPVTSTVTSSSSSSTTVTTPTSTESTST 483
Query: 409 SPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
SP + + +P TSTT + + +ST SSS+ S SS S
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527
>AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin
BMK-1 protein.
Length = 958
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAIL 569
++PN V +SG+++ PV V +LL L AE++R AA L
Sbjct: 173 DDPNKKGVIVSGVEEVPVRNRSDVFKLL-QLGAEKRRTAATL 213
>AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like
protein KLP-14 protein.
Length = 958
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 444 NEPNPAVVGMSGIQQTPVGGEPRVRRLLXYLTAEEQRMAAIL 569
++PN V +SG+++ PV V +LL L AE++R AA L
Sbjct: 173 DDPNKKGVIVSGVEEVPVRNRSDVFKLL-QLGAEKRRTAATL 213
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVD--VENQKYRKTHWN 294
+ Y ACV R YQ + W+D + YRC DG+ ++ + + K R+
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGCIAHDKQRRVPLG 160
Query: 295 ATN 303
T+
Sbjct: 161 QTD 163
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 371 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 267
IYF D Q R + IF+ F+A C F W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174
>Z70266-1|CAB61045.1| 364|Caenorhabditis elegans Hypothetical
protein C40C9.1 protein.
Length = 364
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
L+ R RR I + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344
>AF083646-1|AAC32857.1| 364|Caenorhabditis elegans putative
potassium channel subunitn2P20 protein.
Length = 364
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
L+ R RR I + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 380 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTS 255
SLS+ FD T+ + D++ D F + F WFST+
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTA 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,719
Number of Sequences: 27780
Number of extensions: 338182
Number of successful extensions: 1032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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