Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0025
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.2  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 NERHPADTGRWRAQGQASPGIFNSRGAADGS 562
           +E HP     +   G AS  IF++ GAA G+
Sbjct: 3   DEDHPIYAPFFGVMGAASAIIFSALGAAYGT 33


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 FPDKPWKGQQNEPN 455
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 518 ASPGIFNSRGAADGSDISSRR 580
           + PG  N  G++DG D   ++
Sbjct: 156 SQPGSLNGYGSSDGCDARKKK 176


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 FPDKPWKGQQNEPN 455
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 497 DRCLLDAAHSDNSRIWLVLLALPWF 423
           D  LLDA  S N+ +W+ L    +F
Sbjct: 399 DELLLDADWSVNAGMWMWLSCSSFF 423


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 311 R*ECRIPHVLCAIALRRRSKWRE 379
           R EC +P   CA+  + +   +E
Sbjct: 50  RPECMVPEYQCAVKRKEKKAQKE 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,608
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)