Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0025
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 35 0.047
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 31 0.44
At1g15780.1 68414.m01893 expressed protein 31 0.58
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 30 1.0
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 30 1.0
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 30 1.0
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 30 1.0
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 30 1.3
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 29 2.4
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 29 3.1
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 29 3.1
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family prote... 29 3.1
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 28 4.1
At2g30480.2 68415.m03713 expressed protein 27 7.2
At2g30480.1 68415.m03712 expressed protein 27 7.2
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 9.5
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 34.7 bits (76), Expect = 0.047
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = -1
Query: 466 TTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSS 308
+T FGS PF G S L SPF STTQ+++ GNSTF SS
Sbjct: 94 STPSFGSSNSPFGGTSTFGQKSFGLSTPQSSPFGSTTQQSQPA-FGNSTFGSS 145
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFI 246
Q CV + + + +PW W D+ T RC +++ KY I
Sbjct: 284 QLCVHRVANESSRPWVWW-DYVTDFHSRCSMKEKKYSI 320
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 156 QERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPENALECHEYIEDEN 320
Q+RL A +V GSL +PP + DQ+R++ S P++P ++L+ E N
Sbjct: 538 QQRLQASGQVTGSL-LPPQNVVDQQRQLYQS--QRTLPEMPSSSLDSTAQTESAN 589
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ + W W D+ T RC +++ KY
Sbjct: 283 QLCVHKVAKENNRSWVWW-DYVTDFHIRCSMKEKKY 317
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
QAC + + + +PW W D+ T RC +++ KY
Sbjct: 285 QACFFRVTNESGKPWLWW-DYVTDFAIRCPMKEEKY 319
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
QACV + +PW W D+ T RC +++ KY
Sbjct: 281 QACVYRVMNDTGKPWVWW-DYVTDFAIRCPMKEKKY 315
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = -2
Query: 357 RNAIAHSTWGIRHSHLRCIRGIPVRFPV--------FLVFDIHSSYEVF 235
+ +A + WG+R C+ G P++ + FL +D +SSY +F
Sbjct: 809 KTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLF 857
>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein
similar to GB:AAC99312 from [Arabidopsis thaliana]
(Plant J. (1999) In press)
Length = 478
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 73 ALFMLCCLVLPALSAEDVSYQACVDKYSRKGY 168
A+F L CLV A D S+ ACV K G+
Sbjct: 236 AMFKLRCLVRTHHGARDDSFNACVQKEDELGH 267
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ W W D+ T RC +++ KY
Sbjct: 282 QLCVHKVAKEKNTSWVWW-DYVTDFNIRCSMKEKKY 316
>At2g30480.2 68415.m03713 expressed protein
Length = 566
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 118 EDVSYQACVDKYSRKG--YQPWQEWSDHYTCHRYRCEIRDGKYFIAAVDVENQKYRKTHW 291
+D Y++ + +++ G Q Q +SDH H+ + R+ YF D N ++ W
Sbjct: 168 DDSLYRSPIGIHAKDGGRKQKLQTFSDHL--HKQYSDSRN--YFCDVADFNNSRFSDDEW 223
Query: 292 NA 297
NA
Sbjct: 224 NA 225
>At2g30480.1 68415.m03712 expressed protein
Length = 621
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 118 EDVSYQACVDKYSRKG--YQPWQEWSDHYTCHRYRCEIRDGKYFIAAVDVENQKYRKTHW 291
+D Y++ + +++ G Q Q +SDH H+ + R+ YF D N ++ W
Sbjct: 168 DDSLYRSPIGIHAKDGGRKQKLQTFSDHL--HKQYSDSRN--YFCDVADFNNSRFSDDEW 223
Query: 292 NA 297
NA
Sbjct: 224 NA 225
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 252 SSYEVFPVSDLASVAVARVVIRPLLPRLVTFPGVF 148
S +++ P LA+ AVA P +P T PG+F
Sbjct: 189 SGFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMF 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,247
Number of Sequences: 28952
Number of extensions: 314705
Number of successful extensions: 964
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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