Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0024
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    24   8.9  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    24   8.9  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 104 TSAAPEPRWKIFKKIEKMGRNIRDGIVKAG 193
           T+ A +PR K+FK+ EK  +  R    +AG
Sbjct: 277 TALASDPRIKLFKEQEKAAKAARKWEREAG 306


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 86  VLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAI 229
           VL    T ++P  ++KIF K+ ++ + + DG  +    +++L S   +
Sbjct: 293 VLLKEETLSSPV-KYKIFMKLSEVDKRLNDGADETLQLLDLLSSISVV 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,092
Number of Sequences: 5004
Number of extensions: 21024
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)