Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0018
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 36 0.030
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 32 0.49
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 2.6
04_04_0530 + 26024931-26025923 29 3.4
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 6.0
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 7.9
02_04_0391 + 22576839-22577387 28 7.9
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 129 LQDDVND--HGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKRLHQYSTKK-QKEIHA 299
++ DV D GKT +L+ M S++ G ++ W KRLH Y K +EIHA
Sbjct: 334 IEGDVKDLLEGKTSTELEEMQSQIESQMRSGTAKVVEYWEAILKRLHIYKAKACLREIHA 393
Query: 300 LFPRE 314
R+
Sbjct: 394 SILRK 398
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/68 (22%), Positives = 35/68 (51%)
Frame = +3
Query: 132 QDDVNDHGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKRLHQYSTKKQKEIHALFPR 311
QDD+ + TLG ++ ++++ ++GP +L ++ + F H Y + E+ + +
Sbjct: 305 QDDITNVIVTLGSIQIHNKSVARDIIVGPGDELKEFILSF-CTHNYLIVQDVELKDVIEK 363
Query: 312 ERKTYSHC 335
+ Y +C
Sbjct: 364 KLNIYCYC 371
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 359 LQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHK 487
L +N IE+ P++ PK+IR P E TP HK
Sbjct: 505 LSTRNRIESRNPLAFAPKVIRTCGPGLEFGEDSNATPASSRHK 547
>04_04_0530 + 26024931-26025923
Length = 330
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Frame = +3
Query: 138 DVNDHGKTLGDLKTMVSKL-SQNTVIGPE-----SKLDDWRV-------PFKRLHQYSTK 278
+++DH + +G+L+T V+ L +Q + E S++D + F++L
Sbjct: 71 EIDDHQRRVGELETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQVHGDQFQQLSDQYND 130
Query: 279 KQKEIHALFPRERKTYSH-CQLNQKLRAYKIRT 374
++ + L + R++ H CQL ++LRA KI T
Sbjct: 131 RRGMMDTLEEQLRESQEHVCQLEEQLRAAKIST 163
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 105 HFEKKLDKLQDDVNDHGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKRLHQYSTKKQ 284
H E++L++ + D KTL L+ +S L ++ + +S L + F+ H+ ++
Sbjct: 954 HLEQELEQSKRKTMDFCKTLESLEAKLSSLQEDISLKEQSLLSELENIFQE-HKEHEERI 1012
Query: 285 KEIHALFPRERK 320
+H L + K
Sbjct: 1013 DRVHLLLNKIEK 1024
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 350 AKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTP 469
A+ Q + A P P R+RSP +R+VE+PR P
Sbjct: 245 AEKATKQQPRKPASPQRKPAPSPRRRSPPSRRVESPRCRP 284
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 311 RKKNIQPLPIKSKAKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTL 475
++K+++ P + +Q N E + PP ++ R P T ETP +P+L
Sbjct: 49 KQKHVEIQPTNKLEQLIQPTNEHEQQQLLQPPPSVL-VREPETAGPETPHPSPSL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,593
Number of Sequences: 37544
Number of extensions: 272250
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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