Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0008
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.85
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 0.85
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.85
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 29 0.85
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 27 2.0
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 2.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.0
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 27 2.0
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.9
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 0.85
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M+ E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 SLANC 414
S ANC
Sbjct: 1568 SFANC 1572
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 663 FVLSNSGYTVERFXRGLSCI 604
FV++N GYT+ER GL +
Sbjct: 474 FVINNKGYTIERLIHGLHAV 493
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 0.85
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M+ E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 SLANC 414
S ANC
Sbjct: 1568 SFANC 1572
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYRK 282
+ +++W+ T + +R C+ D ++F+ A +N+KY+K
Sbjct: 97 EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKK 135
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPT 335
+RR LH +P ECHE I++E+V+ P+
Sbjct: 79 KRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 542 CC*IFQETPDPGLATDRCLLDAAHSDNSRI 453
CC FQET G A C L+ + DNS +
Sbjct: 35 CC--FQETGSTGTANSICTLNDSEDDNSSL 62
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 663 FVLSNSGYTVERFXRGL 613
F+++N GYT+ER GL
Sbjct: 473 FIINNDGYTIERLIHGL 489
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 443 KRAKSCCCRNERHP-ADTGRWRAQGQASPGIFNSRGAADGS 562
+R C C+ E HP TGR + A G F S +GS
Sbjct: 391 QRLNQCVCKGEDHPNVGTGRGGPEIDALEGTFGSGIPYNGS 431
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
S +SSP T SP +S++ + + +S+ SSS S SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 255 GCRKPKIPENALECHEYIEDEN 320
G K IP+N EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,576
Number of Sequences: 5004
Number of extensions: 66337
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -