BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0002
(598 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ697720-1|CAG26913.1| 207|Anopheles gambiae putative odorant-b... 27 0.46
L76038-1|AAC27383.1| 683|Anopheles gambiae prophenoloxidase pro... 24 4.3
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc... 24 4.3
AF031626-1|AAD01936.1| 683|Anopheles gambiae prophenoloxidase p... 24 4.3
AY705398-1|AAU12507.1| 555|Anopheles gambiae nicotinic acetylch... 23 5.7
AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic acetylch... 23 5.7
AF457565-1|AAL68795.1| 391|Anopheles gambiae TRIO protein protein. 23 5.7
>AJ697720-1|CAG26913.1| 207|Anopheles gambiae putative
odorant-binding protein OBPjj10 protein.
Length = 207
Score = 27.1 bits (57), Expect = 0.46
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 425 LTEEFFGFTFIKFQPCFLD 369
L++EFFG + F CFLD
Sbjct: 111 LSKEFFGLVMVCFVKCFLD 129
>L76038-1|AAC27383.1| 683|Anopheles gambiae prophenoloxidase
protein.
Length = 683
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 450 ISLDEFLIKIRPPMSESRRK 509
I LD+FL+ +RP + RR+
Sbjct: 526 IELDKFLVALRPGANRIRRR 545
>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
channel alpha1 subunit protein.
Length = 1893
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 355 NSFMASRKQGWNLIKVKPKNSSVNSTQTV--VAQSVL 459
++ ++ G + ++KPK + VNS+ T VA+S+L
Sbjct: 1682 HTVLSGPNDGSSQTEMKPKQNCVNSSNTYNHVAESIL 1718
>AF031626-1|AAD01936.1| 683|Anopheles gambiae prophenoloxidase
protein.
Length = 683
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 450 ISLDEFLIKIRPPMSESRRK 509
I LD+FL+ +RP + RR+
Sbjct: 526 IELDKFLVALRPGANRIRRR 545
>AY705398-1|AAU12507.1| 555|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 4 protein.
Length = 555
Score = 23.4 bits (48), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 444 GSISLDEFLIKIRPPMSESRRKL*NK 521
G L FL RPP E+ RKL +K
Sbjct: 350 GKDFLPRFLFMKRPPYIENHRKLLSK 375
>AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 4 protein.
Length = 555
Score = 23.4 bits (48), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 444 GSISLDEFLIKIRPPMSESRRKL*NK 521
G L FL RPP E+ RKL +K
Sbjct: 350 GKDFLPRFLFMKRPPYIENHRKLLSK 375
>AF457565-1|AAL68795.1| 391|Anopheles gambiae TRIO protein protein.
Length = 391
Score = 23.4 bits (48), Expect = 5.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 124 KVKAEMESSVAWHRPMSAGSVQEEELMQKSARAMTQATDPLEKLA 258
K+ A M + PM A + EE +++ +A +PL+K A
Sbjct: 103 KIDAAMANFKTLFEPMKADLAKLEEEVKRQVLDAWKALEPLQKEA 147
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,509
Number of Sequences: 2352
Number of extensions: 10502
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -