Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16i18
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 32 0.088
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 32 0.12
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 30 0.36
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.36
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 30 0.36
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 29 0.62
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.82
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 29 1.1
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.9
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 28 1.9
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.9
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 28 1.9
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 28 1.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 1.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.3
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 27 3.3
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 4.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 4.4
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 26 7.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.6
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 32.3 bits (70), Expect = 0.088
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = -3
Query: 713 NKLERRELTKQIRQLRNHIKTVLYDN--EVTIDSLKSQVEDSVLDSECSSRYVDNW--QV 546
N +E E K + +L + E+T + LK + ++ D S++ + ++
Sbjct: 27 NGVEENEQVKNLLKLYKEANEEFGEKLQEITKECLKGKKPENTEDGATSNKAFEGLRSEI 86
Query: 545 ART-EQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTN 417
A +QH+ + + E I K+ I+H Q++ + ++LTN
Sbjct: 87 ANQGKQHIRIAKDLETLIIAPFS--KMSIDHSQKLQTSQQVLTN 128
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = -3
Query: 542 RTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYD 363
R EQ++E + + + ++Q+++ IEH+ + + ++ T+ E LE + W+ K
Sbjct: 109 RLEQYMESSSLDASILPKNLQQWRVYIEHKAPCWAILAVVDLATVLEILESLSSWLEKDA 168
Query: 362 RDME 351
D++
Sbjct: 169 IDLQ 172
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = -3
Query: 542 RTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYD 363
R EQ++E + + + ++Q+++ IEH+ + + ++ T+ E LE + W+ K
Sbjct: 109 RLEQYMESSSLDASILPKNLQQWRVYIEHKAPCWAILAVVDLATVLEILESLSSWLEKDA 168
Query: 362 RDME 351
D++
Sbjct: 169 IDLQ 172
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = -3
Query: 830 RFVCGDDALLKIXXH*HRFLNSIFDKEHYRIALAENEAKNKLERRELTKQIRQ--LRNHI 657
+++C D++ K+ + LNS + E Y IA AENE + + E+R + + R +R
Sbjct: 1205 KYLCEYDSIDKVRNSFFKNLNSFY--EMYSIAKAENEERFEKEKRRIMSEDRDKLIRGRQ 1262
Query: 656 KTVL---YDNEVTIDSLKSQVEDSVLDSECSSRYVD 558
KT + Y N+ + +D+ + S +D
Sbjct: 1263 KTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETID 1298
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 30.3 bits (65), Expect = 0.36
Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
Frame = -3
Query: 752 EHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECS 573
E Y +L E + N E R + + V DN+++ +K V+D + S
Sbjct: 1023 EDYAKSLTEVDY-NFFENRGIDYKSNPTEQSTVLVSSDNDISSQEIKI-VDDYYISSNEH 1080
Query: 572 SRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLE 393
S + + +E+ VI++ +S I+ ++ + + + +EL+ + ++++
Sbjct: 1081 STHASDLASVSSEEF--VIDDGSSSIIDISDELQDESSSRDSLKKGIELIEDYYLSQSTS 1138
Query: 392 KIEKWM--SKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEK 264
K+E + Y ++ DI++ + D R + IEK
Sbjct: 1139 KLESSVEGKNYLLKVKFKDINVNWDLHDGYDWEATRATISSAIEK 1183
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 767 SIFDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTI 624
S+ D++ Y +L ENEA NK+E L + ++ +I + N+ I
Sbjct: 1619 SMADEDEYLFSLMENEAFNKVEDAALQQSLKHGIAYISEITSSNDQNI 1666
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -3
Query: 761 FDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDS 582
F+ E YR + E NK+ + + R++ + ++L ++ + K ++ + D
Sbjct: 27 FEAEEYRDSFLSQENMNKINHTTIERLFREMTENDPSLLSSSKTLAELSKGELAKAREDL 86
Query: 581 ECSSRYVDNWQVARTEQHLE--VINEAENSCI 492
+ ++ N TE E I + NSC+
Sbjct: 87 KSVLSFLKNNLPVDTESSSEAFTIEKDNNSCV 118
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 29.5 bits (63), Expect = 0.62
Identities = 23/117 (19%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Frame = -3
Query: 536 EQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNI--TINETLEKIEKWMSKYD 363
+Q+ ++ N+ E + T E+ +I+ + + S +++L T+ K + MS
Sbjct: 265 QQNQDLYNQTE-ALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMK 323
Query: 362 RDMEG-------IDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEEREK 213
ME + ++++ K++ Q +++KR + + +E D+ + ++ ERE+
Sbjct: 324 SKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQ 380
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.82
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -3
Query: 614 KSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSE 435
K ++E S+ E R V+N + + V EAE T E+ + +Q+++ +
Sbjct: 130 KEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKD 189
Query: 434 VELLTNITINETLEKI-EKWMSKYDRDME 351
+E TI + KI E S+ D D++
Sbjct: 190 MEQENASTIQKLTSKIRELQASQLDHDLQ 218
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = -3
Query: 659 IKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIE 480
++ VLY +K+ V+D L E + V++ + E + AE+ IE
Sbjct: 194 VRAVLYPRFAEAHRVKADVQDKRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAIE 253
Query: 479 QYKLKIEHEQRIHSEVELLTNITINE 402
K+ E +LL +I N+
Sbjct: 254 HAKILYEQILNKDYNTDLLRSIIKNQ 279
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -3
Query: 704 ERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHL 525
E ++ Q Q+ NHIKT Y+ + + + +DS + R +W + E
Sbjct: 299 ENQDFDDQSTQILNHIKTAYYELTIISKQVLCCILSFPVDSFLAER--SSWLIVHREVG- 355
Query: 524 EVINEAENSCIETIEQYKLKIEHEQR 447
++ N S + ++ K +E R
Sbjct: 356 DLSNALSVSMVRLVDILKFSVESVNR 381
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 410 INETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEKHD 258
+ LE I K M KYD E D ++ +Q+MR K F++TI D
Sbjct: 378 LKSLLEAIIKKM-KYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSID 427
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -3
Query: 674 QLRNHIKTVLYDNEVTIDSLKSQVED 597
QLR+++ TV YDN+ ++ ++ S++ D
Sbjct: 403 QLRDYLSTVTYDNKDSLKNMNSKLVD 428
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/180 (16%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Frame = -3
Query: 773 LNSIFDKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDS 594
LNS+ + H R+A+ E +E EL Q +L++ + E +SL + ++
Sbjct: 245 LNSMKSENHQRMAMLEENHARVMETAELQHQ-AELQDFASNI----EQKANSLIMEYKNE 299
Query: 593 VLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIEQ------YKLKIEHE---QRIH 441
+ +E + + E + + E ++S ++ +++ +++ +H+ +R+
Sbjct: 300 LQSAEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQ 359
Query: 440 SEVELL--TNITINETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIE 267
S ++ L N ++ + +E++++ ++ E + + ++ + Q + E+TI+
Sbjct: 360 SAIQPLQEENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALESTIK 419
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = -3
Query: 485 IEQYKLKIEHEQR-----IHS--EVELLTNITINETLEKIEKWMSKYDRDME 351
+ YKL I H + +H+ E + + + L+++E W K+D D+E
Sbjct: 266 VSLYKLSINHNNKTTLLAVHNSEERDYMVRQARHHQLQELENWSRKHDEDLE 317
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -3
Query: 668 RNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIE 489
++H V++ + L + S+ D E + Y ++ R ++ E+I E + +E
Sbjct: 458 KSHWNRVIHSMVCNVLKLFMDINPSLFD-EVDAEYSES---RRKKEDEEIIREERWTILE 513
Query: 488 TIEQ---YKLKIEHEQRIHSEVELLTNITINET 399
I + KLK ++ +HS E L ++++ T
Sbjct: 514 NIAKENAMKLKSQNPTTVHSTTERLKKLSLDYT 546
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 533 QHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWMSK 369
QH + I+E S + + L EHE+R + E L N + K+ KW+ K
Sbjct: 1706 QHRKAISELNFSLNNNM--FDLVDEHEERPKNRKETLGNPLKGKVFLKLTKWLGK 1758
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.9
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -3
Query: 653 TVLYDNEVTI-DSLKSQVEDSVLDSECSSRYVDNWQVARTEQHLEV-----INEAENSCI 492
++ + N+++I D K+QV + ++N + R E+++++ IN + +
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN-EDKRVEENIQLKDGLLINSKDQILL 905
Query: 491 ETIEQYK---LKIEHEQR--IHSEVELLTNITINE-TLEKIEKWMSKYDRDMEGIDIDMQ 330
Q +K HE+ IH +ELLTNI + T + I K + +Y ++ I+
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 329 RKKNHY 312
R Y
Sbjct: 966 RNHKPY 971
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 2.5
Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Frame = -3
Query: 728 ENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLD--SECSSRYVDN 555
+ ++ K + +IR + K V Y+ + +S + + E+ + + +E S D
Sbjct: 131 KKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDT 190
Query: 554 WQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINETLEKIEKWM 375
+ H +I + S ++ +K + +H E NI++ +K++ +
Sbjct: 191 RAIDVVLDH-RLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHI 249
Query: 374 SKY---DR-----------DMEGIDIDMQRKKNHYQDMRD------KRINFENTIE 267
+ DR D+E +DI+ +RK+ +Y++ + K +N + ++E
Sbjct: 250 KQVILLDREIREDPTTTREDIEAMDIEKERKRENYEEYKQVDRIVAKHLNSDGSVE 305
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.3
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Frame = -3
Query: 752 EHYRIALAENEAKNKLERRE---LTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDS 582
E + + ENE L + E LT +I QL ++ + L++ E++
Sbjct: 581 EKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAK 640
Query: 581 ECSSRYVDNW--QVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITI 408
E S+ N Q+ TE ++ + + EN E + LK E E ++ +LL +
Sbjct: 641 EDSTSKTSNLLEQLKMTEAEVDSLRK-ENE--ENKQVIALK-ESELVKSNDNKLL----L 692
Query: 407 NETLEKIEKWMSKYDRDMEGIDIDMQRKKNHYQDMRDKRINFENTIEK 264
NE +E + +S+ +ME + + ++ +++++ + +++ K
Sbjct: 693 NEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 3.3
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = -3
Query: 782 HRFLNSIFDKEHYRIALAENEAKN-KLERRELTKQ-IRQLRNHIKTVLYDNEVTIDSLKS 609
+R +NSI EH I EN K + E EL ++ +L+ KT +N DS+
Sbjct: 168 NRRVNSI---EHIIIPRLENTIKYIESELEELEREDFTRLKKVQKTK--ENAEKADSVTK 222
Query: 608 QVEDSVLDSECSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVE 429
+ ++ ++ V E EVINE ENS +T + E+ S+ E
Sbjct: 223 EEHQGGSNTLQQTKDVGGAIAPAAEVGKEVINEVENSKDDTYSLPSTSTDDEEENDSDEE 282
Query: 428 LL 423
++
Sbjct: 283 VI 284
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 716 KNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVL---DSECSSRYVDNW 552
KN ++R I+ L + ++ + D+ LKS+ ED+ L +S + ++NW
Sbjct: 236 KNGIQRESFIPCIKLLEHRLQVICLDSPNDYRRLKSKTEDTYLYPANSPEVKKALENW 293
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.4
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = -3
Query: 518 INEAENSCIETIEQY---KLKIEHEQRIHSEVELLTNITINETLEKIEKWMSKYDRDMEG 348
+N A N+ + TI Y K K++ + + EVE L ++ + +K K++ + R
Sbjct: 401 LNVAANA-VSTIPVYRTTKTKMKKNRFKYVEVEKLPDLILESYGKKAPKFLRVFARSSSH 459
Query: 347 IDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEE 222
I M R+K + + E+ + D ++ W + K E
Sbjct: 460 IP-KMIRRKRQMDSKKYFSFDKESDRQVIDQVLSDWYSGKHE 500
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 746 YRIALAENEAKNKLERRELTKQ-IRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSECSS 570
+ + + E +K+E E K+ I+ +R I + Y NE + L ++ +VL + S
Sbjct: 137 HTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSK 196
Query: 569 RYVDNWQVAR 540
VDN +V +
Sbjct: 197 FNVDNIRVVK 206
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 353 EGIDIDMQRKKNHYQDMRDKRINFENTIEKHDLLMKQWINFKEEREKARI-YRENMTKSA 177
E +D R+K+ Y M N ENT + +++ + N K + A I Y E+ K+
Sbjct: 473 ESDKMDFSRRKDAYISMLPFSPNTENTAHRVTIMVAKLYNIKLDSLIAAIRYVESCLKTG 532
Query: 176 I 174
I
Sbjct: 533 I 533
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 7.6
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -3
Query: 758 DKEHYRIALAENEAKNKLERRELTKQIRQLRNHIKTVLYDNEVTIDSLKSQVEDSVLDSE 579
D + +LAE +A NK R E + + L + KTV + T +SL+++ + E
Sbjct: 230 DVSSIKASLAEEQASNKSLRGEQERLEKLLVSSNKTVSTLRQ-TENSLRAECKTLQEKLE 288
Query: 578 -CSSRYVDNWQVARTEQHLEVINEAENSCIETIEQYKLKIEHEQRIHSEVELLTNITINE 402
C+ D+ + + ++ ++A + IE +I + SE + L+ NE
Sbjct: 289 KCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFDNLKSERDTLS--IKNE 346
Query: 401 TLEKI 387
LEK+
Sbjct: 347 KLEKL 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,781
Number of Sequences: 5004
Number of extensions: 61000
Number of successful extensions: 259
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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