Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16i16
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   1.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   8.5  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 584 CRESVKIMLAHRRVKKVENHWSLSIKVLLHNSSDSLFRVTIIVSPF 447
           C+E + +++    V   ENH++LS    L N+S     + IIV+ F
Sbjct: 287 CQEEIDVVVF---VVNAENHFTLSATDFLRNASTEKSHIFIIVNKF 329


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 264 LSRSREVIDLGCQLVNIFYLVPAVSGTFSS 353
           LS+  ++++  C+L +    +P++S  FSS
Sbjct: 708 LSKIYQILNAACELTDFAAQIPSISKAFSS 737


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 541 FTLRWANIIFTLSRHPYLHATF 606
           FT  +  I++  SR PYLHA +
Sbjct: 130 FTYGFLGILYGTSRTPYLHAQY 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,500
Number of Sequences: 5004
Number of extensions: 58004
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)