Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16i15
(734 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D44466-1|BAA07918.1| 953|Homo sapiens proteasome subunit p112 p... 58 2e-19
BC114434-1|AAI14435.1| 953|Homo sapiens proteasome 26S non-ATPa... 58 2e-19
BC112344-1|AAI12345.1| 953|Homo sapiens proteasome (prosome, ma... 58 2e-19
BC094720-1|AAH94720.1| 953|Homo sapiens proteasome (prosome, ma... 58 2e-19
AC009407-1|AAX93127.1| 953|Homo sapiens unknown protein. 58 2e-19
BC073833-1|AAH73833.1| 865|Homo sapiens PSMD1 protein protein. 58 3e-08
BC001053-1|AAH01053.1| 869|Homo sapiens PSMD1 protein protein. 58 3e-08
BC047897-1|AAH47897.1| 844|Homo sapiens PSMD1 protein protein. 51 4e-06
BC020223-1|AAH20223.1| 856|Homo sapiens Unknown (protein for IM... 51 4e-06
BC014013-1|AAH14013.1| 848|Homo sapiens PSMD1 protein protein. 51 4e-06
BC039845-1|AAH39845.1| 825|Homo sapiens Similar to proteasome (... 40 0.009
BC032445-1|AAH32445.1| 824|Homo sapiens PSMD1 protein protein. 40 0.009
AK131318-1|BAD18481.1| 276|Homo sapiens protein ( Homo sapiens ... 30 7.5
>D44466-1|BAA07918.1| 953|Homo sapiens proteasome subunit p112
protein.
Length = 953
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 379 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVEPV 218
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LVEPV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPV 928
>BC114434-1|AAI14435.1| 953|Homo sapiens proteasome 26S non-ATPase
subunit 1 protein.
Length = 953
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 379 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVEPV 218
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LVEPV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPV 928
>BC112344-1|AAI12345.1| 953|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 1 protein.
Length = 953
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 379 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVEPV 218
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LVEPV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPV 928
>BC094720-1|AAH94720.1| 953|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 1 protein.
Length = 953
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 379 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVEPV 218
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LVEPV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPV 928
>AC009407-1|AAX93127.1| 953|Homo sapiens unknown protein.
Length = 953
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
Score = 58.0 bits (134), Expect(2) = 2e-19
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 379 FEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGEQVLVEPV 218
F++L NPARVM QLK LT+ E + P K ++IGGI++L T E + LVEPV
Sbjct: 875 FQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPV 928
>BC073833-1|AAH73833.1| 865|Homo sapiens PSMD1 protein protein.
Length = 865
Score = 58.0 bits (134), Expect = 3e-08
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKKKK 865
>BC001053-1|AAH01053.1| 869|Homo sapiens PSMD1 protein protein.
Length = 869
Score = 58.0 bits (134), Expect = 3e-08
Identities = 36/79 (45%), Positives = 46/79 (58%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXX 554
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++ +
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKKEKEKE------ 847
Query: 553 XXXXXSKMEVDEEEKKPSK 497
KMEVDE EKK K
Sbjct: 848 -KKEEEKMEVDEAEKKEEK 865
>BC047897-1|AAH47897.1| 844|Homo sapiens PSMD1 protein protein.
Length = 844
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRR 587
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKK 842
>BC020223-1|AAH20223.1| 856|Homo sapiens Unknown (protein for
IMAGE:5087823) protein.
Length = 856
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRR 587
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKK 842
>BC014013-1|AAH14013.1| 848|Homo sapiens PSMD1 protein protein.
Length = 848
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPLXXXXXXXXXRVTTAVLSIAAAKARRR 587
LKMP+++ KSN KPS +AYPAPL +V+TAVLSI AKA+++
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSI-TAKAKKK 842
>BC039845-1|AAH39845.1| 825|Homo sapiens Similar to proteasome
(prosome, macropain) 26S subunit, non-ATPase, 1 protein.
Length = 825
Score = 39.9 bits (89), Expect = 0.009
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPL 665
LKMP+++ KSN KPS +AYPAPL
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPL 817
>BC032445-1|AAH32445.1| 824|Homo sapiens PSMD1 protein protein.
Length = 824
Score = 39.9 bits (89), Expect = 0.009
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 733 LKMPQLELKSNSKPSLYAYPAPL 665
LKMP+++ KSN KPS +AYPAPL
Sbjct: 795 LKMPKVQYKSNCKPSTFAYPAPL 817
>AK131318-1|BAD18481.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ16314 fis, clone SPLEN2030847, highly similar
to Mus musculus Kif21b (Kif21b) mRNA. ).
Length = 276
Score = 30.3 bits (65), Expect = 7.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 231 RTCSPSPVWFNMTIPPIVISFKGVKPEPS 317
R CSP+P ++ I PI S GV P PS
Sbjct: 104 RPCSPTPAESSLDILPISPSLSGVTPVPS 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,191,021
Number of Sequences: 237096
Number of extensions: 1464977
Number of successful extensions: 3766
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3758
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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